Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_F11
(980 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00036-14|ABC71802.1| 672|Caenorhabditis elegans Hypothetical p... 44 2e-04
AF143151-1|AAD37917.1| 163|Caenorhabditis elegans heat shock pr... 44 2e-04
Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical pr... 31 1.3
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 1.7
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 1.7
Z66514-6|CAA91345.3| 337|Caenorhabditis elegans Hypothetical pr... 30 2.9
Z46996-10|CAL22702.1| 337|Caenorhabditis elegans Hypothetical p... 30 2.9
Z81067-4|CAB02976.2| 632|Caenorhabditis elegans Hypothetical pr... 29 5.1
AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen prot... 28 8.8
>U00036-14|ABC71802.1| 672|Caenorhabditis elegans Hypothetical
protein R151.7a protein.
Length = 672
Score = 44.0 bits (99), Expect = 2e-04
Identities = 17/41 (41%), Positives = 29/41 (70%)
Frame = +2
Query: 74 TDKELANMVAQQLFSNAMVTAGLVMDPRNLITHINDLLVKV 196
TDKE A ++A+Q++ NA++TAGL+ D ++ +N LL +
Sbjct: 620 TDKETAAILAEQIYDNALITAGLIKDTSRMVGRLNKLLTSL 660
>AF143151-1|AAD37917.1| 163|Caenorhabditis elegans heat shock
protein 75 protein.
Length = 163
Score = 44.0 bits (99), Expect = 2e-04
Identities = 17/41 (41%), Positives = 29/41 (70%)
Frame = +2
Query: 74 TDKELANMVAQQLFSNAMVTAGLVMDPRNLITHINDLLVKV 196
TDKE A ++A+Q++ NA++TAGL+ D ++ +N LL +
Sbjct: 111 TDKETAAILAEQIYDNALITAGLIKDTSRMVGRLNKLLTSL 151
>Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical
protein ZC168.5 protein.
Length = 172
Score = 31.1 bits (67), Expect = 1.3
Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = -3
Query: 750 PPPXGGGXK-PGXPPXPKRXGGP 685
PPP GGG + P PP P GGP
Sbjct: 44 PPPCGGGYEAPPPPPPPSYAGGP 66
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.7 bits (66), Expect = 1.7
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -3
Query: 759 RXXPPPXGGGXKPGXPPXPKRXGGPXG 679
R PPP G P PP P R GP G
Sbjct: 286 RPPPPPSSGMWPPPPPPPPGRTPGPPG 312
Score = 29.5 bits (63), Expect = 3.8
Identities = 21/76 (27%), Positives = 24/76 (31%)
Frame = +2
Query: 680 PXGPPXRLGXGGXPGFXPPPXGGGXXRFLPXKXLGXXPQXKKXFXXQXGPXQRGXKTPKK 859
P PP R G G G PPP G + G P GP P +
Sbjct: 318 PPPPPSRFGPPGMGGMPPPPPPG-------MRYPGGMPPPPPPRYPSAGPGMYPPPPPSR 370
Query: 860 RAXFXXGFFPMXPPPP 907
G + PPPP
Sbjct: 371 PPAPPSGHGMIPPPPP 386
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.7 bits (66), Expect = 1.7
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -3
Query: 759 RXXPPPXGGGXKPGXPPXPKRXGGPXG 679
R PPP G P PP P R GP G
Sbjct: 296 RPPPPPSSGMWPPPPPPPPGRTPGPPG 322
Score = 29.5 bits (63), Expect = 3.8
Identities = 21/76 (27%), Positives = 24/76 (31%)
Frame = +2
Query: 680 PXGPPXRLGXGGXPGFXPPPXGGGXXRFLPXKXLGXXPQXKKXFXXQXGPXQRGXKTPKK 859
P PP R G G G PPP G + G P GP P +
Sbjct: 328 PPPPPSRFGPPGMGGMPPPPPPG-------MRYPGGMPPPPPPRYPSAGPGMYPPPPPSR 380
Query: 860 RAXFXXGFFPMXPPPP 907
G + PPPP
Sbjct: 381 PPAPPSGHGMIPPPPP 396
>Z66514-6|CAA91345.3| 337|Caenorhabditis elegans Hypothetical
protein K01A11.3 protein.
Length = 337
Score = 29.9 bits (64), Expect = 2.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 106 AVVLQRHGDGWTRHGSEKFNNTYK 177
A+ RHGD WTRH +K Y+
Sbjct: 293 AISWTRHGDYWTRHNDDKETEIYE 316
>Z46996-10|CAL22702.1| 337|Caenorhabditis elegans Hypothetical
protein K01A11.3 protein.
Length = 337
Score = 29.9 bits (64), Expect = 2.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 106 AVVLQRHGDGWTRHGSEKFNNTYK 177
A+ RHGD WTRH +K Y+
Sbjct: 293 AISWTRHGDYWTRHNDDKETEIYE 316
>Z81067-4|CAB02976.2| 632|Caenorhabditis elegans Hypothetical
protein F23A7.5 protein.
Length = 632
Score = 29.1 bits (62), Expect = 5.1
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 88 SEHGSSAVVLQRHGDGWTRHGSEKFNNTYK*SSSQG 195
S GS+ V RHG HG+ + N Y +SS+G
Sbjct: 227 STPGSAPVPHTRHGSSTPGHGNHQLQNNYGGASSRG 262
>AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen protein
69 protein.
Length = 394
Score = 28.3 bits (60), Expect = 8.8
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +2
Query: 680 PXGPPXRLGXGGXPGFXPPPXGGG 751
P G P + G G PG+ PPP G
Sbjct: 259 PPGLPGQCGPPGPPGYTPPPGPPG 282
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,286,269
Number of Sequences: 27780
Number of extensions: 234422
Number of successful extensions: 1400
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1335
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2552786072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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