Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_F08
         (866 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredox...    62   1e-10
SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr ...    35   0.017
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    27   2.6  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    26   6.0  
SPAC589.06c |||pho88 family protein|Schizosaccharomyces pombe|ch...    26   8.0  

>SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredoxin
           Etp1/ cytochrome oxidase cofactor Cox15,
           fusion|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 631

 Score = 61.7 bits (143), Expect = 1e-10
 Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
 Frame = +1

Query: 547 SKAVGYWLLGCSGMVFTAVVLGGVTRLTESGLSMVTWR-LLGEKMPTNEEEWQK 705
           SK V +WLLG S +V   VV+GG+TRLTESGLS+  W+ + G   P  +E+W +
Sbjct: 95  SKKVAFWLLGSSALVLAIVVVGGITRLTESGLSITEWKPITGVIPPLTDEQWNQ 148


>SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 364

 Score = 34.7 bits (76), Expect = 0.017
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +1

Query: 562 YWLLGCSGMVFTAVVLGGVTRLTESGLSMVTWRLLGEKMPTNEE 693
           YW  G S   F    +G V +LT  GLS +T+++L +  P N +
Sbjct: 133 YWGCGLSRQAFPNQRIGSVDQLTTKGLSKLTYKVLEKLFPENTQ 176


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 18/92 (19%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
 Frame = +1

Query: 295 IPNSCTAMLNLSRLCQCKQSLSAVQSKLLVSSRNGFSNSIISRQIITTTKTHRYNILGRL 474
           +P +C +++ LS++       S++    L+++      S ++         HRY+++  +
Sbjct: 287 LPTTCKSLVVLSQVRSTAVGTSSIYYSFLLATLLSTKPSALA------ISEHRYSLVESV 340

Query: 475 SLSSTIKSNSIIMRFCSSTPKP-KTSKAVGYW 567
           +LSS   +    ++  ++TPK     K++  W
Sbjct: 341 TLSSLFDALHETLQLKAATPKAVHVDKSINVW 372


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
 Frame = +1

Query: 292 SIPNSCTAMLNLSRLCQCKQSL--SAVQSKLLVSSRNGFSNSIISRQIITTTKTHRYNIL 465
           S+ +S T   +L+       SL  S++ S  L SS    S+S+ S    +TT     +  
Sbjct: 118 SLASSSTTSSSLASSSITSSSLASSSITSSSLASSSTT-SSSLASSSTNSTTSATPTSSA 176

Query: 466 GRLSLSSTIKSNSIIMRFCSSTPKPKTSKA 555
              SLSST  SNS      +S+    T+ A
Sbjct: 177 TSSSLSSTAASNSATSSSLASSSLNSTTSA 206


>SPAC589.06c |||pho88 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 202

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = +3

Query: 726 IQSLIPKSNXPSQTXMDMVXXXXPEPGXXXGAXVPPAAYFGTGNAP 863
           IQS++P  +  +   + +        G       PPA  FG GN P
Sbjct: 122 IQSILPLISLFTNNLVSIYIFNKAAEGSLSRPFAPPAGLFGGGNKP 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,936,440
Number of Sequences: 5004
Number of extensions: 52226
Number of successful extensions: 128
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)