Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_F08
         (866 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    27   0.22 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    25   1.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    25   1.2  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    24   2.1  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    24   2.1  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   4.8  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   4.8  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   6.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   8.4  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 27.1 bits (57), Expect = 0.22
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 523 SSTPKPKTSKAVGYWLLGCSGMVFTAVV 606
           +S PK    KA   W LGC+  +F A+V
Sbjct: 283 NSLPKVSYIKASEIWFLGCTIFLFAAMV 310


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 523 SSTPKPKTSKAVGYWLLGC 579
           S+ P+P  + A+G+W + C
Sbjct: 371 SAIPEPSKNPAMGHWQMSC 389


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 568 LLGCSGMVFTAVVLGGVTRLTESGLSM 648
           L+ CSG+VF  +++ GV  + +   +M
Sbjct: 769 LIICSGLVFVQILINGVWMIIDPAKAM 795


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = +1

Query: 460 ILGRLSLSSTIKSNSIIM--RFCSSTPKPKTSKAVGYWLLGCSGMVFTAV 603
           I GR++L  T     + M     S  P     KA+  W+ GC   VF A+
Sbjct: 228 IPGRVALLVTSMLTLVTMFTGLKSDIPPVAYVKALDVWMAGCMMFVFAAL 277


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 45  EYIQTYLPYLLFNCTLKL 98
           EY  T+ PY + NCT+ +
Sbjct: 160 EYDHTWWPYDILNCTIHI 177


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 526 STPKPKTSKAVGYWLLGCSGMVFTAVV 606
           S P     KA+  W+  CS  VF +++
Sbjct: 266 SLPPVSYVKAIDVWMSSCSVFVFLSLM 292


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 28  GILKILSTYRPTYRIYYLTVHLSY 99
           G+L +++T  PTY  Y    +L Y
Sbjct: 645 GVLTLVATSMPTYICYLGKAYLMY 668


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 367 QSKLLVSSRNGFSNSIISRQIITTTKTH 450
           +S +LV ++NG     IS   I+T +TH
Sbjct: 431 KSSVLVHTKNGRLKYQISDNDISTNETH 458


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +1

Query: 553 AVGYWLLGCSGMVFTAVVLGGVTRLTESG 639
           AV   +  C G+ FTA    G    TE G
Sbjct: 277 AVSGMVFDCGGLEFTAAPFNGWYMSTEIG 305


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,320
Number of Sequences: 438
Number of extensions: 3865
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)