Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_F07
         (866 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    27   2.6  
SPAC227.07c |pab1||protein phosphatase regulatory subunit Pab1|S...    27   3.5  
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual    27   4.6  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    26   6.0  
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce...    26   6.0  
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb...    26   8.0  
SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces...    26   8.0  

>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
 Frame = +2

Query: 494 NTKLASLYVPEKDYKINIYNFNGEKLGSLE---YDDASVKLGDVMCLKFIEFPCDRPCLL 664
           +T+L    + +K  K+     N E+L  LE   YD  ++ L +V CL   ++     CL 
Sbjct: 701 HTQLVDDAIIDKFRKLQSKKINNEQLKQLENLMYDKFTISLFNVRCLIGPDYETGWRCLP 760

Query: 665 XGYXAGWLXLWDLNTNKCISKLQ 733
            G     L    L+ N  IS LQ
Sbjct: 761 KGCDYHILKECSLDINFEISILQ 783


>SPAC227.07c |pab1||protein phosphatase regulatory subunit
           Pab1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
 Frame = +2

Query: 365 HTDSHLITQEKGGKLKVFELTNSGYEEDAVIEVDYPGFCRFEANTK----LASLYVPEKD 532
           HT  +L T +KGG++ +FE  +S          +Y  F  F+++      L SL + EK 
Sbjct: 39  HTGDYLATGDKGGRVVLFERNHSKK------GCEYKFFTEFQSHEPEFDYLKSLEIEEKI 92

Query: 533 YKINIYNFNGEKLGSLEYDDASVKL 607
            KI            L  +D ++KL
Sbjct: 93  NKIRWCKRTNRAHFLLSTNDKTIKL 117


>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 335 LVSSAELYLSVGCMRKHNRFSNRLVTSL 252
           LV SA LYL +GC   H +  NR+ ++L
Sbjct: 352 LVLSA-LYLYIGCFHMHTQVLNRMSSAL 378


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 39/182 (21%), Positives = 80/182 (43%), Gaps = 17/182 (9%)
 Frame = +2

Query: 242 PGGLERLLAGSKNGY-VYAYNLQTNRVQQKIQVGQAPILHL-IHTDSHLITQEKGGK-LK 412
           P G E + AGS++ + ++ +++QT ++ + +   + P+  L  ++   L+      K ++
Sbjct: 434 PSG-EIVCAGSQDSFEIFMWSVQTGQLLETLAGHEGPVSSLSFNSSGSLLASGSWDKTVR 492

Query: 413 VFEL-TNSGYEEDAVIEVDYPGFCRFEANTKLASLYVPEKDYKINIYN---------FNG 562
           ++++ + SG  E   I  D      F  + K   + V   D ++  +N          +G
Sbjct: 493 IWDIFSRSGIVEPLPIPSDVLSLA-FHPDGK--EVCVASLDGQLTFWNVQEGKQTSLIDG 549

Query: 563 EK--LGSLEYDDASVKLGDVMCLKF--IEFPCDRPCLLXGYXAGWLXLWDLNTNKCISKL 730
            K   G   +DDA       +   F  I +  D  C+L    + ++ L+D+ T   I K 
Sbjct: 550 RKDLSGGRRFDDARTAENSSLNKTFTSICYSADGSCVLSAGTSKYVCLYDIITGVLIKKF 609

Query: 731 QV 736
           Q+
Sbjct: 610 QL 611


>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 425 TNSGYEEDAVIEVDYPGFCRFEANTKLASLYVPEKDYKINI 547
           ++S  EEDA +E+D P   + E N   AS  +  K   I +
Sbjct: 249 SDSEIEEDATVEIDRPVPTKTEENLLSASQLLKPKQQAIKL 289


>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 933

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +2

Query: 455 IEVDYPGFCRFEANTKLASLYVPEKD-YKINIYNFNGEKLGSLEYDDASVKLGDVMCLKF 631
           + + Y G  R +   K  ++ + E D  KIN        L  LEY DA+V L  + C+  
Sbjct: 578 VAMAYYGLLRTKNYEKNENILIYEADDVKINFPQLIIAYLKHLEYVDAAVYLDYIACIPL 637

Query: 632 I 634
           +
Sbjct: 638 V 638


>SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 378

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 414 TLSFPPFSCVIRWL 373
           T+ + PFSC I+WL
Sbjct: 360 TIDYLPFSCAIKWL 373


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,774,130
Number of Sequences: 5004
Number of extensions: 54540
Number of successful extensions: 154
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)