Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_F06
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual        27   3.5  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    27   4.6  
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3...    26   6.1  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    26   8.1  
SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase catal...    26   8.1  

>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 510

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -3

Query: 501 NALIRSILDYGTFILEPCNAVALHKLDIIQSKALRI 394
           NAL++ I  Y     E  +A+A   L+ I+SKALR+
Sbjct: 200 NALMKVIAGYDEENTEDYSALAAADLESIRSKALRV 235


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -2

Query: 685 NNIRVPVKSEATFLGVILDSRLTGSPHCYYISD-KCEKILNILR 557
           N+ ++ VKSE        D  LT SP+ Y+ S  + EK L + R
Sbjct: 43  NSFKLLVKSEGNNQSTTADVTLTKSPNAYHASSAREEKDLQVSR 86


>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 297 FLFRAFQVYNHPLYTKLRSLLECMDYPYWTHKS 199
           F+F A Q YN   Y ++ S L   + P+W+  S
Sbjct: 393 FIFVAQQTYNALGYAQVVSDLNSTELPFWSDSS 425


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = -3

Query: 207  HKSPPCLIVSLQKYLALQAPTHRSQFLPIFCVNYD 103
            H S   L    Q  L +    H  + LP  C NYD
Sbjct: 1065 HNSAYSLDAISQNLLPMLKDLHSKELLPAICFNYD 1099


>SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase
           catalytic subunit Dpm1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 295 KPVTKKLSSEVQGGFRTFDLQSVNRARTHS 384
           KPV + L SEV      F ++ + RAR H+
Sbjct: 169 KPVLETLMSEVTSKGYVFQMEIIARAREHN 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,371,625
Number of Sequences: 5004
Number of extensions: 69792
Number of successful extensions: 170
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)