Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_F06
(875 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 31 0.82
Z83113-4|CAB05546.2| 1020|Caenorhabditis elegans Hypothetical pr... 31 1.1
AF180730-1|AAF06159.1| 1020|Caenorhabditis elegans RNA interfere... 31 1.1
U41995-11|AAA83467.1| 665|Caenorhabditis elegans Hypothetical p... 30 1.9
Z92784-7|CAE54895.1| 808|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z92784-6|CAB07197.1| 805|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z81526-9|CAE54892.1| 808|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z81526-8|CAB04268.1| 805|Caenorhabditis elegans Hypothetical pr... 29 3.3
AF043700-1|AAB97571.2| 328|Caenorhabditis elegans Hypothetical ... 28 7.6
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 31.5 bits (68), Expect = 0.82
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Frame = -3
Query: 498 ALIRSILDYG----TFILEPCNAVALHKLDIIQSKALRIIAGAMRSSPINALQVECSEAP 331
ALI+ YG T +L N L KL+I ALR G + +P + + EC P
Sbjct: 688 ALIKPTALYGAPAWTSLLSDTN---LEKLEIAYRSALRACVGLTKDTPTDHIYQECRVLP 744
Query: 330 LHLRRQFLCDRFLFRAFQVYNHP 262
L + + A + HP
Sbjct: 745 LKEEYKLATQQMYLAAIKSNTHP 767
>Z83113-4|CAB05546.2| 1020|Caenorhabditis elegans Hypothetical
protein K08H10.7 protein.
Length = 1020
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Frame = -3
Query: 573 F*IYCVASLEFGGEPTLSLL---KLLYNALIRSILDYGTFILEP--CN 445
F IY F GEP L+ KL YNA S+LDY I++P CN
Sbjct: 249 FGIYIGIKELFDGEPVLNFAIVDKLFYNAPKMSLLDYLLLIVDPQSCN 296
>AF180730-1|AAF06159.1| 1020|Caenorhabditis elegans RNA interference
promoting factorRDE-1 protein.
Length = 1020
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Frame = -3
Query: 573 F*IYCVASLEFGGEPTLSLL---KLLYNALIRSILDYGTFILEP--CN 445
F IY F GEP L+ KL YNA S+LDY I++P CN
Sbjct: 249 FGIYIGIKELFDGEPVLNFAIVDKLFYNAPKMSLLDYLLLIVDPQSCN 296
>U41995-11|AAA83467.1| 665|Caenorhabditis elegans Hypothetical
protein E02C12.10 protein.
Length = 665
Score = 30.3 bits (65), Expect = 1.9
Identities = 35/149 (23%), Positives = 67/149 (44%), Gaps = 3/149 (2%)
Frame = -3
Query: 588 INVRRF*IYCVASLEFGGEPTLSLLKLLYNALIRSILDYGTFILEPCNAVALHKLDIIQS 409
+++ R + C+++ E E L +LKL Y+ +L F + ++
Sbjct: 305 LDLSRLLMGCLSAHE-RRERGLEMLKL-YHETFNQVLGKELFSFQELQDSYNLYYPMMAM 362
Query: 408 KALRIIAGAMRSSPINALQVECSEAPLHLRRQFLC---DRFLFRAFQVYNHPLYTKLRSL 238
L I++ + +SPI+ +VE S+A + ++ + D + + NHP + KL +L
Sbjct: 363 LLLPIVSSFLDNSPIS--EVEKSQARIKNQKNMIAMMEDLIEVHDYNMKNHPDFLKLMAL 420
Query: 237 LECMDYPYWTHKSPPCLIVSLQKYLALQA 151
E D TH + + +LQK +A
Sbjct: 421 YEFSDGILKTHVTRENVEETLQKTFNTEA 449
>Z92784-7|CAE54895.1| 808|Caenorhabditis elegans Hypothetical
protein F31C3.2b protein.
Length = 808
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/53 (28%), Positives = 30/53 (56%)
Frame = -2
Query: 694 VFYNNIRVPVKSEATFLGVILDSRLTGSPHCYYISDKCEKILNILRCLSGVWW 536
+F ++PV +A +GV+L+ R+ GS +++ +K N ++ LS + W
Sbjct: 417 IFREVRQLPVNYQARTIGVVLNERIAGSVE-KFVNSITKKSFNSVKQLSKLAW 468
>Z92784-6|CAB07197.1| 805|Caenorhabditis elegans Hypothetical
protein F31C3.2a protein.
Length = 805
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/53 (28%), Positives = 30/53 (56%)
Frame = -2
Query: 694 VFYNNIRVPVKSEATFLGVILDSRLTGSPHCYYISDKCEKILNILRCLSGVWW 536
+F ++PV +A +GV+L+ R+ GS +++ +K N ++ LS + W
Sbjct: 414 IFREVRQLPVNYQARTIGVVLNERIAGSVE-KFVNSITKKSFNSVKQLSKLAW 465
>Z81526-9|CAE54892.1| 808|Caenorhabditis elegans Hypothetical
protein F31C3.2b protein.
Length = 808
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/53 (28%), Positives = 30/53 (56%)
Frame = -2
Query: 694 VFYNNIRVPVKSEATFLGVILDSRLTGSPHCYYISDKCEKILNILRCLSGVWW 536
+F ++PV +A +GV+L+ R+ GS +++ +K N ++ LS + W
Sbjct: 417 IFREVRQLPVNYQARTIGVVLNERIAGSVE-KFVNSITKKSFNSVKQLSKLAW 468
>Z81526-8|CAB04268.1| 805|Caenorhabditis elegans Hypothetical
protein F31C3.2a protein.
Length = 805
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/53 (28%), Positives = 30/53 (56%)
Frame = -2
Query: 694 VFYNNIRVPVKSEATFLGVILDSRLTGSPHCYYISDKCEKILNILRCLSGVWW 536
+F ++PV +A +GV+L+ R+ GS +++ +K N ++ LS + W
Sbjct: 414 IFREVRQLPVNYQARTIGVVLNERIAGSVE-KFVNSITKKSFNSVKQLSKLAW 465
>AF043700-1|AAB97571.2| 328|Caenorhabditis elegans Hypothetical
protein K09H9.4 protein.
Length = 328
Score = 28.3 bits (60), Expect = 7.6
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = -3
Query: 519 LLKLLYNALIRSILDYGTFILEPCNAVALHKLDIIQSKALRIIAGAMRSSPIN 361
L+ LLY IR L+YGT + P ++ +Q+ R + ++ IN
Sbjct: 189 LMILLYKTFIRPRLEYGTVVSSPTKKSDEKAIESVQNAFTRRLYSRIKKRYIN 241
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,355,394
Number of Sequences: 27780
Number of extensions: 374041
Number of successful extensions: 722
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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