Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_F05
(979 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 33 0.061
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 1.3
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 1.7
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 4.8
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 5.3
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 7.0
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 33.1 bits (72), Expect = 0.061
Identities = 19/68 (27%), Positives = 19/68 (27%), Gaps = 1/68 (1%)
Frame = +1
Query: 778 PXXXPGXAPPXPXPGXGPXPXXXXPRXPPPPXXXXPXXPXXXXXXXXXXXXXXXXXPP-P 954
P P APP P P P PP P P PP P
Sbjct: 1113 PVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVP 1172
Query: 955 PPXGGXPP 978
P G PP
Sbjct: 1173 APSSGIPP 1180
Score = 29.9 bits (64), Expect = 0.57
Identities = 17/63 (26%), Positives = 17/63 (26%)
Frame = +1
Query: 790 PGXAPPXPXPGXGPXPXXXXPRXPPPPXXXXPXXPXXXXXXXXXXXXXXXXXPPPPPXGG 969
P APP P P P PP P P PP P G
Sbjct: 1079 PSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSG 1138
Query: 970 XPP 978
PP
Sbjct: 1139 APP 1141
Score = 28.7 bits (61), Expect = 1.3
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +1
Query: 778 PXXXPGXAPPXPXPGXGPXPXXXXPRXPPPP 870
P P APP P P G P PP P
Sbjct: 1190 PVPPPSEAPPVPKPSVGVPPVPPPSTAPPVP 1220
Score = 27.9 bits (59), Expect = 2.3
Identities = 19/62 (30%), Positives = 19/62 (30%), Gaps = 2/62 (3%)
Frame = +1
Query: 799 APPXPXP--GXGPXPXXXXPRXPPPPXXXXPXXPXXXXXXXXXXXXXXXXXPPPPPXGGX 972
APP P P G P P P PP P P P P P G
Sbjct: 1168 APPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVP-KPSVGVPPVPPPSTAPPVPTPSAGL 1226
Query: 973 PP 978
PP
Sbjct: 1227 PP 1228
Score = 27.1 bits (57), Expect = 4.0
Identities = 14/40 (35%), Positives = 15/40 (37%)
Frame = +3
Query: 777 PXXXPRXSPPXPPTGXXAXPXXXXPPXPPPPXXXXXPAPS 896
P P +PP P P PP PPP P PS
Sbjct: 1190 PVPPPSEAPPVPK------PSVGVPPVPPPSTAPPVPTPS 1223
Score = 26.2 bits (55), Expect = 7.0
Identities = 16/60 (26%), Positives = 16/60 (26%), Gaps = 1/60 (1%)
Frame = +1
Query: 802 PPXPXPGXGPXPXXXXPRXPPPPXXXXPXXPXXXXXXXXXXXXXXXXXPP-PPPXGGXPP 978
PP P P G P PP P P PP P P PP
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPP 1238
Score = 25.8 bits (54), Expect = 9.3
Identities = 20/71 (28%), Positives = 20/71 (28%), Gaps = 4/71 (5%)
Frame = +1
Query: 778 PXXXPGXAPPXPXP-GXGPXP--XXXXPRXPPPPXXXXPXXPXXXXXXXXXXXXXXXXXP 948
P P APP P P P P P PPP P P
Sbjct: 1033 PIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIP 1092
Query: 949 P-PPPXGGXPP 978
P P P PP
Sbjct: 1093 PVPKPSVAAPP 1103
Score = 25.8 bits (54), Expect = 9.3
Identities = 11/30 (36%), Positives = 11/30 (36%)
Frame = +1
Query: 778 PXXXPGXAPPXPXPGXGPXPXXXXPRXPPP 867
P P APP P P G P PP
Sbjct: 1209 PVPPPSTAPPVPTPSAGLPPVPVPTAKAPP 1238
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.7 bits (61), Expect = 1.3
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +3
Query: 789 PRXSPPXPPTGXXAXPXXXXPPXPPP 866
P +PP PP P PP PPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 25.8 bits (54), Expect = 9.3
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = +1
Query: 802 PPXPXPGXGPXPXXXXPRXPPPP 870
PP P P P P PPPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPP 27
Score = 25.8 bits (54), Expect = 9.3
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +1
Query: 790 PGXAPPXPXPGXGPXPXXXXPRXPPP 867
PG PP P P G P P PPP
Sbjct: 6 PGNPPPPPPP-PGFEPPSQPPPPPPP 30
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.3 bits (60), Expect = 1.7
Identities = 15/36 (41%), Positives = 16/36 (44%)
Frame = +3
Query: 789 PRXSPPXPPTGXXAXPXXXXPPXPPPPXXXXXPAPS 896
P S P PP+ A P PP PPP APS
Sbjct: 1710 PPMSVPPPPS---APPMPAGPPSAPPPPLPASSAPS 1742
Score = 27.9 bits (59), Expect = 2.3
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = +3
Query: 789 PRXSPPXPPTGXXAXPXXXXPPXPPPPXXXXXPAPS 896
P +PP P A P P PPPP P PS
Sbjct: 1686 PVSTPPVRPQS--AAPPQMSAPTPPPPPMSVPPPPS 1719
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 5.3
Identities = 10/27 (37%), Positives = 11/27 (40%)
Frame = +3
Query: 789 PRXSPPXPPTGXXAXPXXXXPPXPPPP 869
P PP + P PP PPPP
Sbjct: 169 PSFQPPSAAAPATSLPSDYNPPPPPPP 195
Score = 23.8 bits (49), Expect(2) = 4.8
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +2
Query: 851 PAPPPPPXXXXP 886
PAPPPPP P
Sbjct: 236 PAPPPPPPPTLP 247
Score = 21.0 bits (42), Expect(2) = 4.8
Identities = 9/24 (37%), Positives = 10/24 (41%)
Frame = +2
Query: 800 PPXXPXRXXGRAXFXXXPAPPPPP 871
P P +A P PPPPP
Sbjct: 221 PEIPPTYTPKQADPLPAPPPPPPP 244
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.6 bits (56), Expect = 5.3
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = +3
Query: 801 PPXPPTGXXAXPXXXXPPXPPPP 869
PP PP PP PPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783
Score = 26.2 bits (55), Expect = 7.0
Identities = 11/31 (35%), Positives = 11/31 (35%)
Frame = +3
Query: 777 PXXXPRXSPPXPPTGXXAXPXXXXPPXPPPP 869
P P P PP PP PPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 25.8 bits (54), Expect = 9.3
Identities = 11/31 (35%), Positives = 11/31 (35%)
Frame = +3
Query: 801 PPXPPTGXXAXPXXXXPPXPPPPXXXXXPAP 893
PP PP P P PPP P P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPP 763
Score = 25.8 bits (54), Expect = 9.3
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +1
Query: 805 PXPXPGXGPXPXXXXPRXPPPP 870
P P P P P P PPPP
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPP 767
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 7.0
Identities = 16/61 (26%), Positives = 16/61 (26%)
Frame = +1
Query: 778 PXXXPGXAPPXPXPGXGPXPXXXXPRXPPPPXXXXPXXPXXXXXXXXXXXXXXXXXPPPP 957
P P APP P P P PP P P PPP
Sbjct: 420 PPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPA 479
Query: 958 P 960
P
Sbjct: 480 P 480
Score = 26.2 bits (55), Expect = 7.0
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Frame = +3
Query: 798 SPPXPPTGXXAXPXXXXPPXPPP-PXXXXXPAPS 896
+PP PP+ A P P PP P P P+
Sbjct: 446 APPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPA 479
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.312 0.151 0.530
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,912,690
Number of Sequences: 5004
Number of extensions: 27412
Number of successful extensions: 159
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 503290872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
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