Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_F05
         (979 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.60 
AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein ...    25   1.4  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   5.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.8 bits (54), Expect = 0.60
 Identities = 11/30 (36%), Positives = 11/30 (36%)
 Frame = +3

Query: 777 PXXXPRXSPPXPPTGXXAXPXXXXPPXPPP 866
           P   P  SP  P  G    P    PP  PP
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52



 Score = 23.0 bits (47), Expect = 4.2
 Identities = 10/34 (29%), Positives = 11/34 (32%)
 Frame = +1

Query: 508 PXXKRRGAPXGPGXXXXPXPXXGGXPXSPXXXPP 609
           P      +P  P     P P  G  P  P   PP
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 23.0 bits (47), Expect = 4.2
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +3

Query: 777 PXXXPRXSPPXPPTGXXAXPXXXXPPXPPP 866
           P    R SPP P  G    P    PP  PP
Sbjct: 31  PQAPQRGSPPNPSQG----PPPGGPPGAPP 56



 Score = 22.6 bits (46), Expect = 5.6
 Identities = 10/30 (33%), Positives = 11/30 (36%)
 Frame = +1

Query: 778 PXXXPGXAPPXPXPGXGPXPXXXXPRXPPP 867
           P   P  +P  P  G  P P    P   PP
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52


>AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein
           protein.
          Length = 87

 Score = 24.6 bits (51), Expect = 1.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 502 VFPPPXPPXXSPSXGXVLSAPFWXGGAGPPN 410
           +FPP  PP    S G ++ A  +  G  PPN
Sbjct: 50  LFPPGPPPNNEDSSGVIVGASGY--GFVPPN 78


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 5.6
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 851 PAPPPPP 871
           PAPPPPP
Sbjct: 341 PAPPPPP 347


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.312    0.151    0.530 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,225
Number of Sequences: 438
Number of extensions: 6332
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32290713
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)