Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_F04
         (985 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    58   5e-07
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    55   2e-06
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    52   2e-05
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    40   0.098
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    40   0.13 
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    38   0.30 
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    36   1.2  

>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 57.6 bits (133), Expect = 5e-07
 Identities = 26/33 (78%), Positives = 26/33 (78%)
 Frame = -1

Query: 553 LXTCSFLRYPXILWITVLPPLSEXIPLAAAERP 455
           L TCSF  YP ILWITVLPPLSE  PLAA ERP
Sbjct: 24  LLTCSFRLYPLILWITVLPPLSELTPLAAVERP 56


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 55.2 bits (127), Expect = 2e-06
 Identities = 31/57 (54%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
 Frame = +2

Query: 368 CINESANARGEAVCVLGALPLPRSLTRCARSFGCGERYXL-TQRR*YGYPQNXGITQ 535
           CI + A AR EAV VL ALPL RS TRC RS GCG      +  R YG PQ  G+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 52.0 bits (119), Expect = 2e-05
 Identities = 23/33 (69%), Positives = 25/33 (75%)
 Frame = +2

Query: 392 RGEAVCVLGALPLPRSLTRCARSFGCGERYXLT 490
           R   +C  G +PLPRSLTR ARSFGCGERY LT
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGERYRLT 58


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 39.9 bits (89), Expect = 0.098
 Identities = 19/24 (79%), Positives = 21/24 (87%)
 Frame = -2

Query: 438 ERGSGRAPNTQTASPRALADSLMQ 367
           +R +  APNTQTASPRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348


>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 39.5 bits (88), Expect = 0.13
 Identities = 18/18 (100%), Positives = 18/18 (100%)
 Frame = +1

Query: 493 KAVIRLSTESGDNAGKNM 546
           KAVIRLSTESGDNAGKNM
Sbjct: 42  KAVIRLSTESGDNAGKNM 59


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 38.3 bits (85), Expect = 0.30
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = +3

Query: 366 SALMNRPTXGERRFAYW 416
           +ALMNRPT GERRFAYW
Sbjct: 25  AALMNRPTRGERRFAYW 41


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 36.3 bits (80), Expect = 1.2
 Identities = 15/16 (93%), Positives = 15/16 (93%)
 Frame = +2

Query: 170 DPXMIRYIDEFGQTTT 217
           DP MIRYIDEFGQTTT
Sbjct: 346 DPDMIRYIDEFGQTTT 361


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 649,688,370
Number of Sequences: 1657284
Number of extensions: 10162191
Number of successful extensions: 19889
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 18866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19848
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 92264799902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)