Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_F04
         (985 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1065 + 23711677-23711837,23711859-23712180,23713071-23713277     31   1.4  
11_01_0662 - 5389746-5390548,5390727-5391368,5391624-5391659,539...    28   9.9  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   9.9  

>07_03_1065 + 23711677-23711837,23711859-23712180,23713071-23713277
          Length = 229

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 23/74 (31%), Positives = 26/74 (35%)
 Frame = -2

Query: 903 GRKPIXPGXXXKXXXXGXXGXKGPXXXSXXGGXKGRXRXSGXXGXGVXNPGXXATRGAFQ 724
           GR  + PG        G  G  G    +  GG  GR   +G  G G   PG     GA  
Sbjct: 71  GRVVVVPGEGS----GGNGGNGGSGGKAGSGGSGGRAGSAGSGGNG-GRPGNSEATGAAD 125

Query: 723 RGXXRPGIFXSPCR 682
                P I  SP R
Sbjct: 126 EAVAAPSISCSPAR 139


>11_01_0662 -
           5389746-5390548,5390727-5391368,5391624-5391659,
           5392314-5392377
          Length = 514

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 14/52 (26%), Positives = 22/52 (42%)
 Frame = +2

Query: 410 VLGALPLPRSLTRCARSFGCGERYXLTQRR*YGYPQNXGITQERTCXQKAIK 565
           +LG   LP+ L RC    G   R+  T+     Y  N  +     C + +I+
Sbjct: 392 ILGCKLLPKHLQRCFGVLGTYPRWTFTREELISYWMNNCVVVSENCMKNSIE 443


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +2

Query: 374 NESAN---ARGEAVCVLGALPLPRSLTRCAR 457
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,444,027
Number of Sequences: 37544
Number of extensions: 308904
Number of successful extensions: 576
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2870111300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)