Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_F04
         (985 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71262-8|CAA95812.1|  302|Caenorhabditis elegans Hypothetical pr...    29   5.1  
AL137227-1|CAB70238.2|  611|Caenorhabditis elegans Hypothetical ...    29   5.1  
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr...    29   6.7  
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr...    29   6.7  
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll...    29   6.7  

>Z71262-8|CAA95812.1|  302|Caenorhabditis elegans Hypothetical
           protein F22D6.10 protein.
          Length = 302

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 21/65 (32%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
 Frame = -2

Query: 894 PIXPGXXXKXXXXGXXGXKGPXXXSXXGGXKGRXRXSGXXGXGVXNPGXXATRGAFQRG- 718
           P   G   +    G  G +GP       G KGR    G  G     PG   TRG  Q G 
Sbjct: 154 PGEAGRDGQPGSDGQSGNEGPTGPRGSPGNKGRDGNPGRDG-SPGRPGRDGTRGVGQPGS 212

Query: 717 XXRPG 703
             +PG
Sbjct: 213 PGQPG 217


>AL137227-1|CAB70238.2|  611|Caenorhabditis elegans Hypothetical
           protein F58D5.1 protein.
          Length = 611

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 16/45 (35%), Positives = 18/45 (40%)
 Frame = -2

Query: 813 GGXKGRXRXSGXXGXGVXNPGXXATRGAFQRGXXRPGIFXSPCRG 679
           GG  G     G  G G   PG     GA+  G  R G+  SP  G
Sbjct: 513 GGDMGYGAYGGGYGGGYGGPGAYGDFGAYGGGGFRGGMRGSPRGG 557


>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical
           protein K04H4.1b protein.
          Length = 1502

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 20/63 (31%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
 Frame = -2

Query: 885 PGXXXKXXXXGXXGXKGPXXXSXXGGXKGRXRXSGXXG-XGVXNPGXXATRGAFQRGXXR 709
           PG        G  G  GP   S   G  GR   SG  G  GV + G    +G   R    
Sbjct: 123 PGCNGTDGFPGMPGLAGPPGQSGQNGNPGRPGLSGPPGEGGVNSQGRKGVKGESGRSGV- 181

Query: 708 PGI 700
           PG+
Sbjct: 182 PGL 184


>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical
           protein K04H4.1a protein.
          Length = 1759

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 20/63 (31%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
 Frame = -2

Query: 885 PGXXXKXXXXGXXGXKGPXXXSXXGGXKGRXRXSGXXG-XGVXNPGXXATRGAFQRGXXR 709
           PG        G  G  GP   S   G  GR   SG  G  GV + G    +G   R    
Sbjct: 123 PGCNGTDGFPGMPGLAGPPGQSGQNGNPGRPGLSGPPGEGGVNSQGRKGVKGESGRSGV- 181

Query: 708 PGI 700
           PG+
Sbjct: 182 PGL 184


>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV)
           collagen protein.
          Length = 1758

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 20/63 (31%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
 Frame = -2

Query: 885 PGXXXKXXXXGXXGXKGPXXXSXXGGXKGRXRXSGXXG-XGVXNPGXXATRGAFQRGXXR 709
           PG        G  G  GP   S   G  GR   SG  G  GV + G    +G   R    
Sbjct: 123 PGCNGTDGFPGMPGLAGPPGQSGQNGNPGRPGLSGPPGEGGVNSQGRKGVKGESGRSGV- 181

Query: 708 PGI 700
           PG+
Sbjct: 182 PGL 184


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,756,750
Number of Sequences: 27780
Number of extensions: 245348
Number of successful extensions: 595
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2563248310
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)