Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_F03
         (872 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...   239   5e-64
SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces...   237   1e-63
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    29   0.65 
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    29   1.1  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    27   4.6  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    26   6.1  

>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score =  239 bits (584), Expect = 5e-64
 Identities = 116/204 (56%), Positives = 137/204 (67%)
 Frame = +1

Query: 88  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 267
           MGAY+Y++EL +KK SDV  FL RVR W+YRQ+  +HRA RP+RPDKARRLGY+AKQ   
Sbjct: 1   MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60

Query: 268 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 447
                              TYGKP   GVN LK  R+ +  AEE            +SYW
Sbjct: 61  IYRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYW 120

Query: 448 VAQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGRSSRGLGKGHRY 627
           V QD++YK+FEVILVDPSHKAIRRDP+INWIVN VHKHRE RGLTS G+ SRG+GKGHRY
Sbjct: 121 VNQDATYKFFEVILVDPSHKAIRRDPRINWIVNPVHKHRESRGLTSIGKKSRGIGKGHRY 180

Query: 628 SQTKGGSRRAAWLRRNTLQLRRKR 699
           + +    + A WLR NTL LRR R
Sbjct: 181 NNS---PQHATWLRHNTLSLRRYR 201


>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score =  237 bits (580), Expect = 1e-63
 Identities = 115/204 (56%), Positives = 137/204 (67%)
 Frame = +1

Query: 88  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 267
           MGAY+Y++EL +KK SDV  FL RVR W+YRQ+  +HRA RP+RPDKARRLGY+AKQ   
Sbjct: 1   MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60

Query: 268 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 447
                              TYGKP   GVN LK  R+ +  AEE            +SYW
Sbjct: 61  IYRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYW 120

Query: 448 VAQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGRSSRGLGKGHRY 627
           V QD++YK+FEVILVDPSHKAIRRDP+INWIVN VHKHRE RGLTS G+ SRG+GKGHR+
Sbjct: 121 VNQDATYKFFEVILVDPSHKAIRRDPRINWIVNPVHKHRESRGLTSIGKKSRGIGKGHRF 180

Query: 628 SQTKGGSRRAAWLRRNTLQLRRKR 699
           + +    + A WLR NTL LRR R
Sbjct: 181 NNS---PQHATWLRHNTLSLRRYR 201


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
 Frame = +1

Query: 4    FHTIHYRESLRFDGLPVGHARRLPQAAKMGAYRYIQELYRKKLSDV--MRFLLRVRV--W 171
            FHTI++ ++  F G P G  + +  AA++  +R +    + K+  +  M+ L++ RV  W
Sbjct: 1143 FHTIYHTDTNIFVGAPTGSGKTM--AAELATWRALHNYPKSKVVYIAPMKALVKERVKDW 1200

Query: 172  QYRQLTRM 195
             +R +  M
Sbjct: 1201 GHRLVEPM 1208


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 449 LHKILHTSISRLSSWTRHTRPFVAILRSTGS*MLYISI 562
           L+KIL  S  ++ ++T H  P V ++ S     LYIS+
Sbjct: 47  LYKILQISAPKVGNFTIHDAPVVGLIDSILEYYLYISV 84


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 454  QDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHK 558
            +  S KY E     P H  +   PK  WI++ +HK
Sbjct: 1182 KSESNKYQEQAYSTPLHHTLNVLPKNKWILSRMHK 1216


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -2

Query: 136 RSVFSYTTPEYICRHPS*QPVADVSRVPQVNRQILRIPYSESY 8
           RSV + T P Y  RHP+ Q        P  +R   + PY ++Y
Sbjct: 492 RSVEAPTLPSYAPRHPT-QANGSRYMNPSTSRMTPQSPYMQNY 533


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,429,418
Number of Sequences: 5004
Number of extensions: 67324
Number of successful extensions: 166
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)