Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_F02
         (882 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar...    28   2.0  
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    26   6.2  

>SPAC9G1.05 |||actin cortical patch component Aip1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 595

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +3

Query: 240 DLSVDVLRRKRSLFSFVGKCPDGTTYVPSCGCISCKIYKDITGS 371
           D   ++   K S+FS +   PD + +V S    SCKI+   TGS
Sbjct: 222 DQVYEIDAHKGSIFS-ISWSPDSSQFVTSSAGYSCKIWDANTGS 264


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -1

Query: 516 NLQXIYNLVXTPSRYMHATNDPSLHREXK*PREQNFHTSITS 391
           N++ +     +P + + + N PS  RE K  R+ +  +SIT+
Sbjct: 261 NVEPVSQPQPSPDKIVSSPNPPSAKREKKKRRKSSMSSSITT 302


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,363,036
Number of Sequences: 5004
Number of extensions: 42278
Number of successful extensions: 115
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)