Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_E22
         (955 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...   118   1e-27
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    67   4e-12
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    44   4e-05
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    30   0.55 

>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score =  118 bits (284), Expect = 1e-27
 Identities = 58/113 (51%), Positives = 72/113 (63%), Gaps = 1/113 (0%)
 Frame = +2

Query: 95   AMLRRHPAPPPAXFDTCLKAARQ-QGFEIDVSXNKSFSKSLNEAVIPERXFFXTLXRIMA 271
            A+LRRH APP   FD+     R  +G  +    +KS +KSL+E V P+  +F TL RI+ 
Sbjct: 715  AVLRRHAAPPLTNFDSLQDILRVCKGMHLKCDTSKSLAKSLDECVDPKEPYFNTLLRILT 774

Query: 272  TRCMQXAAYFVSXSLAADHYXHYGLACPIYTHFTSPIRXYXDVVVHRLLAAXV 430
            TRCM  A YF S + A   + HYGLA PIYTHFTSPIR Y DV+ HR LAA +
Sbjct: 775  TRCMLSAEYFCSGTFAPPDFRHYGLASPIYTHFTSPIRRYADVLAHRQLAAAI 827


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 66.9 bits (156), Expect = 4e-12
 Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
 Frame = +2

Query: 95  AMLRRHPAPPPAXFDTCLKAARQQGFEIDVSXNKSFSKSLNEAVIPERXFFXTLXRIMAT 274
           ++LRRH +P     +      +   F+ D S + +F+ S+             L   MA 
Sbjct: 673 SLLRRHASPKEKQINEFCHFLKSMNFDFDASSSAAFNASMVRLRSTFNEELVELFENMAV 732

Query: 275 RCMQXAAYFVSXSLAAD-HYXHYGLACPIYTHFTSPIRXYXDVVVHRLL 418
           R +  A YF +        + HY L+   YTHFTSPIR Y D++VHRLL
Sbjct: 733 RSLNRAEYFCTGDFGEKTDWHHYALSFNHYTHFTSPIRRYPDIIVHRLL 781


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1157

 Score = 43.6 bits (98), Expect = 4e-05
 Identities = 26/98 (26%), Positives = 45/98 (45%)
 Frame = +2

Query: 125  PAXFDTCLKAARQQGFEIDVSXNKSFSKSLNEAVIPERXFFXTLXRIMATRCMQXAAYFV 304
            P+ F + +  +   G  +++S + + S+ + E    +      L ++   R    + Y +
Sbjct: 824  PSDFASLVAVSELTG--VNLSASSTPSEIMTEIATTKDKRTKMLLQLTLRRMCNESEYTI 881

Query: 305  SXSLAADHYXHYGLACPIYTHFTSPIRXYXDVVVHRLL 418
              S A D   H+  +CP YTHF  P R Y D+ V R L
Sbjct: 882  GTSNAKD-VSHFVFSCPYYTHFCHPTRRYIDICVQRQL 918


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 29.9 bits (64), Expect = 0.55
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +2

Query: 362 THFTSPIRXYXDVVVH 409
           THFT+P+  Y D+VVH
Sbjct: 911 THFTAPLERYGDIVVH 926


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,867,851
Number of Sequences: 5004
Number of extensions: 20352
Number of successful extensions: 43
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 487313384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)