Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_E22
(955 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY052150-1|AAK93574.1| 982|Drosophila melanogaster SD10981p pro... 148 1e-35
AJ276897-1|CAC35051.1| 983|Drosophila melanogaster putative exo... 148 1e-35
AE014297-3526|AAF56281.1| 982|Drosophila melanogaster CG6413-PA... 148 1e-35
BT015237-1|AAT94466.1| 1044|Drosophila melanogaster RE03681p pro... 74 3e-13
AY058669-1|AAL13898.1| 1032|Drosophila melanogaster LD37985p pro... 74 3e-13
AE014296-44|AAN11426.1| 1032|Drosophila melanogaster CG16940-PB,... 74 3e-13
AE014296-43|AAF47351.2| 1032|Drosophila melanogaster CG16940-PA,... 74 3e-13
AE014296-42|AAN11425.1| 1044|Drosophila melanogaster CG16940-PC,... 74 3e-13
>AY052150-1|AAK93574.1| 982|Drosophila melanogaster SD10981p protein.
Length = 982
Score = 148 bits (358), Expect = 1e-35
Identities = 63/114 (55%), Positives = 82/114 (71%)
Frame = +2
Query: 92 CAMLRRHPAPPPAXFDTCLKAARQQGFEIDVSXNKSFSKSLNEAVIPERXFFXTLXRIMA 271
CA+LRRHP PPP FD +K+AR QGF++D++ S SL++ V + +F T+ RI+
Sbjct: 692 CAVLRRHPRPPPTNFDPLVKSARYQGFQVDINSGLELSHSLDKCVKADNPYFNTMIRILT 751
Query: 272 TRCMQXAAYFVSXSLAADHYXHYGLACPIYTHFTSPIRXYXDVVVHRLLAAXVG 433
TRCM A YF+S SL + + HYGLA PIYTHFTSPIR Y D++VHRLLAA +G
Sbjct: 752 TRCMMQAVYFISGSLQKEEFFHYGLAAPIYTHFTSPIRRYSDIMVHRLLAASIG 805
>AJ276897-1|CAC35051.1| 983|Drosophila melanogaster putative
exoribonuclease DIS3 protein.
Length = 983
Score = 148 bits (358), Expect = 1e-35
Identities = 63/114 (55%), Positives = 82/114 (71%)
Frame = +2
Query: 92 CAMLRRHPAPPPAXFDTCLKAARQQGFEIDVSXNKSFSKSLNEAVIPERXFFXTLXRIMA 271
CA+LRRHP PPP FD +K+AR QGF++D++ S SL++ V + +F T+ RI+
Sbjct: 693 CAVLRRHPRPPPTNFDPLVKSARYQGFQVDINSGLELSHSLDKCVKADNPYFNTMIRILT 752
Query: 272 TRCMQXAAYFVSXSLAADHYXHYGLACPIYTHFTSPIRXYXDVVVHRLLAAXVG 433
TRCM A YF+S SL + + HYGLA PIYTHFTSPIR Y D++VHRLLAA +G
Sbjct: 753 TRCMMQAVYFISGSLQKEEFFHYGLAAPIYTHFTSPIRRYSDIMVHRLLAASIG 806
>AE014297-3526|AAF56281.1| 982|Drosophila melanogaster CG6413-PA
protein.
Length = 982
Score = 148 bits (358), Expect = 1e-35
Identities = 63/114 (55%), Positives = 82/114 (71%)
Frame = +2
Query: 92 CAMLRRHPAPPPAXFDTCLKAARQQGFEIDVSXNKSFSKSLNEAVIPERXFFXTLXRIMA 271
CA+LRRHP PPP FD +K+AR QGF++D++ S SL++ V + +F T+ RI+
Sbjct: 692 CAVLRRHPRPPPTNFDPLVKSARYQGFQVDINSGLELSHSLDKCVKADNPYFNTMIRILT 751
Query: 272 TRCMQXAAYFVSXSLAADHYXHYGLACPIYTHFTSPIRXYXDVVVHRLLAAXVG 433
TRCM A YF+S SL + + HYGLA PIYTHFTSPIR Y D++VHRLLAA +G
Sbjct: 752 TRCMMQAVYFISGSLQKEEFFHYGLAAPIYTHFTSPIRRYSDIMVHRLLAASIG 805
>BT015237-1|AAT94466.1| 1044|Drosophila melanogaster RE03681p protein.
Length = 1044
Score = 73.7 bits (173), Expect = 3e-13
Identities = 48/116 (41%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Frame = +2
Query: 95 AMLRRHPAPPPAXFDTCLKAARQQGFEIDVSXNKSFSKSL----NEAVIPERXFFXTLXR 262
A+LR HP P + GFE+D S +K+ +S+ NEA P
Sbjct: 795 AVLRNHPPPLIKSLKALREKLLALGFELDYSSSKALQESMVRLCNEA--PNPVAMNACLS 852
Query: 263 IMATRCMQXAAYFVSX--SLAADHYXHYGLACPIYTHFTSPIRXYXDVVVHRLLAA 424
+ + M A YF S S AD + HY L+ PIYTHFTSPIR Y D++VHRLLAA
Sbjct: 853 QLLMKPMARATYFCSEGKSEPADLW-HYALSIPIYTHFTSPIRRYPDILVHRLLAA 907
>AY058669-1|AAL13898.1| 1032|Drosophila melanogaster LD37985p protein.
Length = 1032
Score = 73.7 bits (173), Expect = 3e-13
Identities = 48/116 (41%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Frame = +2
Query: 95 AMLRRHPAPPPAXFDTCLKAARQQGFEIDVSXNKSFSKSL----NEAVIPERXFFXTLXR 262
A+LR HP P + GFE+D S +K+ +S+ NEA P
Sbjct: 783 AVLRNHPPPLIKSLKALREKLLALGFELDYSSSKALQESMVRLCNEA--PNPVAMNACLS 840
Query: 263 IMATRCMQXAAYFVSX--SLAADHYXHYGLACPIYTHFTSPIRXYXDVVVHRLLAA 424
+ + M A YF S S AD + HY L+ PIYTHFTSPIR Y D++VHRLLAA
Sbjct: 841 QLLMKPMARATYFCSEGKSEPADLW-HYALSIPIYTHFTSPIRRYPDILVHRLLAA 895
>AE014296-44|AAN11426.1| 1032|Drosophila melanogaster CG16940-PB,
isoform B protein.
Length = 1032
Score = 73.7 bits (173), Expect = 3e-13
Identities = 48/116 (41%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Frame = +2
Query: 95 AMLRRHPAPPPAXFDTCLKAARQQGFEIDVSXNKSFSKSL----NEAVIPERXFFXTLXR 262
A+LR HP P + GFE+D S +K+ +S+ NEA P
Sbjct: 783 AVLRNHPPPLIKSLKALREKLLALGFELDYSSSKALQESMVRLCNEA--PNPVAMNACLS 840
Query: 263 IMATRCMQXAAYFVSX--SLAADHYXHYGLACPIYTHFTSPIRXYXDVVVHRLLAA 424
+ + M A YF S S AD + HY L+ PIYTHFTSPIR Y D++VHRLLAA
Sbjct: 841 QLLMKPMARATYFCSEGKSEPADLW-HYALSIPIYTHFTSPIRRYPDILVHRLLAA 895
>AE014296-43|AAF47351.2| 1032|Drosophila melanogaster CG16940-PA,
isoform A protein.
Length = 1032
Score = 73.7 bits (173), Expect = 3e-13
Identities = 48/116 (41%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Frame = +2
Query: 95 AMLRRHPAPPPAXFDTCLKAARQQGFEIDVSXNKSFSKSL----NEAVIPERXFFXTLXR 262
A+LR HP P + GFE+D S +K+ +S+ NEA P
Sbjct: 783 AVLRNHPPPLIKSLKALREKLLALGFELDYSSSKALQESMVRLCNEA--PNPVAMNACLS 840
Query: 263 IMATRCMQXAAYFVSX--SLAADHYXHYGLACPIYTHFTSPIRXYXDVVVHRLLAA 424
+ + M A YF S S AD + HY L+ PIYTHFTSPIR Y D++VHRLLAA
Sbjct: 841 QLLMKPMARATYFCSEGKSEPADLW-HYALSIPIYTHFTSPIRRYPDILVHRLLAA 895
>AE014296-42|AAN11425.1| 1044|Drosophila melanogaster CG16940-PC,
isoform C protein.
Length = 1044
Score = 73.7 bits (173), Expect = 3e-13
Identities = 48/116 (41%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Frame = +2
Query: 95 AMLRRHPAPPPAXFDTCLKAARQQGFEIDVSXNKSFSKSL----NEAVIPERXFFXTLXR 262
A+LR HP P + GFE+D S +K+ +S+ NEA P
Sbjct: 795 AVLRNHPPPLIKSLKALREKLLALGFELDYSSSKALQESMVRLCNEA--PNPVAMNACLS 852
Query: 263 IMATRCMQXAAYFVSX--SLAADHYXHYGLACPIYTHFTSPIRXYXDVVVHRLLAA 424
+ + M A YF S S AD + HY L+ PIYTHFTSPIR Y D++VHRLLAA
Sbjct: 853 QLLMKPMARATYFCSEGKSEPADLW-HYALSIPIYTHFTSPIRRYPDILVHRLLAA 907
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,233,908
Number of Sequences: 53049
Number of extensions: 311449
Number of successful extensions: 560
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4751175096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -