Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_E22
         (955 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23514-1|AAC46543.1|  817|Caenorhabditis elegans Hypothetical pr...    69   4e-12
Z70718-6|CAA94677.1| 1029|Caenorhabditis elegans Hypothetical pr...    66   5e-11
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen...    28   8.6  

>U23514-1|AAC46543.1|  817|Caenorhabditis elegans Hypothetical
           protein F48E8.6 protein.
          Length = 817

 Score = 69.3 bits (162), Expect = 4e-12
 Identities = 41/115 (35%), Positives = 54/115 (46%), Gaps = 2/115 (1%)
 Frame = +2

Query: 95  AMLRRHPAPPPAXFDTCLKAARQQGFEIDVSXNKSFSKSLNEAVIPERXFFXTLXRI--M 268
           A+LR HP P         +   + GF +D   +   S SL +     R        I  +
Sbjct: 541 ALLRNHPPPKEKMIKDVAEQCARIGFPLDGRTSGLLSTSLRKYQGKSRLDMCIRQVISSL 600

Query: 269 ATRCMQXAAYFVSXSLAADHYXHYGLACPIYTHFTSPIRXYXDVVVHRLLAAXVG 433
             + MQ A YF +  +    Y H+ L    YTHFTSPIR Y DV+VHR LAA +G
Sbjct: 601 TIKPMQQAKYFCTFEMPLSFYHHFALNVDHYTHFTSPIRRYPDVIVHRQLAAALG 655


>Z70718-6|CAA94677.1| 1029|Caenorhabditis elegans Hypothetical
           protein C04G2.6 protein.
          Length = 1029

 Score = 65.7 bits (153), Expect = 5e-11
 Identities = 27/35 (77%), Positives = 30/35 (85%)
 Frame = +2

Query: 329 YXHYGLACPIYTHFTSPIRXYXDVVVHRLLAAXVG 433
           Y H+GLAC IYTHFTSPIR Y DV+VHRLLAA +G
Sbjct: 844 YQHFGLACAIYTHFTSPIRRYADVIVHRLLAAAIG 878



 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 30/70 (42%), Positives = 39/70 (55%)
 Frame = +2

Query: 92  CAMLRRHPAPPPAXFDTCLKAARQQGFEIDVSXNKSFSKSLNEAVIPERXFFXTLXRIMA 271
           CA+LRRHP P    +   ++AAR +GFEI V   K  + SLN  V  +      L R++ 
Sbjct: 697 CALLRRHPVPLKESYKPLVEAARHRGFEIIVESGKGLADSLNRCVDKKNPMLNRLLRMLT 756

Query: 272 TRCMQXAAYF 301
           TRCM  A YF
Sbjct: 757 TRCMTQAVYF 766


>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element
           on autosome protein2 protein.
          Length = 1758

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -1

Query: 421 RQQPVHHHVRVXPYGRGEVRVDGTGQSXXXXXVGG 317
           +QQP H H +   YG+     +G GQ       GG
Sbjct: 53  QQQPQHQHQQAQQYGQATGSTNGGGQQQMTSMYGG 87


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,152,786
Number of Sequences: 27780
Number of extensions: 137259
Number of successful extensions: 255
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2475644248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)