Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_E21
         (943 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.2  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   5.1  
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy...    26   6.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   8.8  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 16/52 (30%), Positives = 16/52 (30%)
 Frame = +2

Query: 749 KXXPGXSPPGKXPPXXPLXXPXPXPVYXEYXXPPFSPXXXXRXAXSPXXPPP 904
           K  P   P    P   P   P P P       PP  P      A  P  PPP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/40 (30%), Positives = 14/40 (35%)
 Frame = +2

Query: 785 PPXXPLXXPXPXPVYXEYXXPPFSPXXXXRXAXSPXXPPP 904
           P   P+  P P P+      PP  P         P  PPP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 18/72 (25%), Positives = 22/72 (30%)
 Frame = +2

Query: 722  GGXXPXRDFKXXPGXSPPGKXPPXXPLXXPXPXPVYXEYXXPPFSPXXXXRXAXSPXXPP 901
            GG  P       P   P    PP      P P P+      PP +P        +P  P 
Sbjct: 1679 GGMAPAHPVSTPP-VRPQSAAPPQMSAPTPPPPPM--SVPPPPSAPPMPAGPPSAPPPPL 1735

Query: 902  PXRVSPXXXGXG 937
            P   +P     G
Sbjct: 1736 PASSAPSVPNPG 1747


>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 505

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 38  SXKIFVVFXVCINKLICNCSQDGK**YPGPRLWK 139
           S K+F V    +N ++CN   + +  + G R WK
Sbjct: 179 SIKVFTVAAFIVNGILCNLGVNNEKKFIGFRYWK 212


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 17/72 (23%), Positives = 21/72 (29%)
 Frame = +3

Query: 672 PPPLXEXQKNSTPXXXKVAXXPXGTLKXXRGXPPLXXXPPXXXSXFPXPXXFTXNTXSXL 851
           PPP       +     K    P    +  RG PP+           P P   +    S  
Sbjct: 293 PPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIP 352

Query: 852 FPPXGXXGGPXP 887
            PP G    P P
Sbjct: 353 LPPQGRSAPPPP 364


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,677,600
Number of Sequences: 5004
Number of extensions: 39822
Number of successful extensions: 87
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)