Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_E21
(943 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 33 0.22
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 32 0.68
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 32 0.68
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 32 0.68
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 1.2
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 1.2
U80023-1|AAG24037.1| 180|Caenorhabditis elegans Hypothetical pr... 30 2.1
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 30 2.1
Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical pr... 30 2.8
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 30 2.8
Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical pr... 29 4.8
L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein. 29 4.8
AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein. 29 4.8
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 6.4
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 6.4
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 6.4
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr... 28 8.4
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein. 28 8.4
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 33.5 bits (73), Expect = 0.22
Identities = 25/81 (30%), Positives = 29/81 (35%), Gaps = 1/81 (1%)
Frame = +2
Query: 677 PPXXASKKFDXXXSXGGXXPXRDFKXXPGXSPPGKXPPXXPLXXPXPXPVYXEYXXPPF- 853
PP K S P R + P SPP + PP P P P PP
Sbjct: 124 PPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTP-----PSPQRRPPRTPPSP 178
Query: 854 SPXXXXRXAXSPXXPPPXRVS 916
P R SP PPP R++
Sbjct: 179 EPRNPPRTPPSPIPPPPPRLN 199
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 31.9 bits (69), Expect = 0.68
Identities = 18/57 (31%), Positives = 18/57 (31%)
Frame = +2
Query: 770 PPGKXPPXXPLXXPXPXPVYXEYXXPPFSPXXXXRXAXSPXXPPPXRVSPXXXGXGP 940
PP P P P P PP A SP PPP R SP P
Sbjct: 258 PPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPP 314
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 31.9 bits (69), Expect = 0.68
Identities = 18/57 (31%), Positives = 18/57 (31%)
Frame = +2
Query: 770 PPGKXPPXXPLXXPXPXPVYXEYXXPPFSPXXXXRXAXSPXXPPPXRVSPXXXGXGP 940
PP P P P P PP A SP PPP R SP P
Sbjct: 279 PPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPP 335
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 31.9 bits (69), Expect = 0.68
Identities = 18/57 (31%), Positives = 18/57 (31%)
Frame = +2
Query: 770 PPGKXPPXXPLXXPXPXPVYXEYXXPPFSPXXXXRXAXSPXXPPPXRVSPXXXGXGP 940
PP P P P P PP A SP PPP R SP P
Sbjct: 264 PPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPP 320
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/61 (31%), Positives = 21/61 (34%)
Frame = +2
Query: 758 PGXSPPGKXPPXXPLXXPXPXPVYXEYXXPPFSPXXXXRXAXSPXXPPPXRVSPXXXGXG 937
PG +P PP + P P P PP P P PPP R P G
Sbjct: 281 PGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMP-------GMPPPPPPSRFGPPGMGGM 333
Query: 938 P 940
P
Sbjct: 334 P 334
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/61 (31%), Positives = 21/61 (34%)
Frame = +2
Query: 758 PGXSPPGKXPPXXPLXXPXPXPVYXEYXXPPFSPXXXXRXAXSPXXPPPXRVSPXXXGXG 937
PG +P PP + P P P PP P P PPP R P G
Sbjct: 291 PGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMP-------GMPPPPPPSRFGPPGMGGM 343
Query: 938 P 940
P
Sbjct: 344 P 344
>U80023-1|AAG24037.1| 180|Caenorhabditis elegans Hypothetical
protein F07C4.7 protein.
Length = 180
Score = 30.3 bits (65), Expect = 2.1
Identities = 21/69 (30%), Positives = 21/69 (30%)
Frame = -2
Query: 939 GPXPXXXGETLXGGGXXGEXAXRXXXKGEKGGXXYSX*TGKGXGXXXGXXGGXXPGGEXP 760
GP P GE GGG G G G G G G G GG G
Sbjct: 36 GPGPRGPGEWNNGGGRGGFGGNNGWNNGGGGFNGNGGFNGGGRGGGRGGNGGFGDNGGLR 95
Query: 759 GXXLKSRXG 733
G R G
Sbjct: 96 GGNGGGRGG 104
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/46 (34%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Frame = +2
Query: 770 PPGKXPPXXPLXXPXPXPVYXEYXXPP-FSPXXXXRXAXSPXXPPP 904
PP PP P+ P P P PP F P P PPP
Sbjct: 27 PPPCPPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPP 72
>Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical
protein T10B10.1 protein.
Length = 428
Score = 29.9 bits (64), Expect = 2.8
Identities = 21/87 (24%), Positives = 26/87 (29%), Gaps = 1/87 (1%)
Frame = +2
Query: 662 PXAXAPPXXASKKFDXXXSXGGXXPXRDFKXXPGXSPPGKXPPXXPLXXPXPXPVYXEYX 841
P APP + P + P PP + P P P P +
Sbjct: 304 PGTRAPPATRAPPATRAPPATTRAPPATTRPAPASQPPVREPETPDSGYPSPAPQEPAHP 363
Query: 842 XPPF-SPXXXXRXAXSPXXPPPXRVSP 919
P + SP SP P P SP
Sbjct: 364 SPSYPSPSYPSPSYPSPSYPSPSYPSP 390
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/45 (37%), Positives = 20/45 (44%)
Frame = -2
Query: 903 GGGXXGEXAXRXXXKGEKGGXXYSX*TGKGXGXXXGXXGGXXPGG 769
GGG G+ G++GG YS TG G G GG GG
Sbjct: 281 GGGYGGDRDRGGDRGGDRGGSRYS--TGGGSGGGYRSGGGSSGGG 323
>Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical
protein C02C6.1b protein.
Length = 838
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/48 (31%), Positives = 15/48 (31%)
Frame = +3
Query: 789 PXXXSXFPXPXXFTXNTXSXLFPPXGXXGGPXPXXXPPXXGFPXXXGG 932
P S P P PP G G P P P G P GG
Sbjct: 760 PSGPSPVPRPAPAPPGGRQAPMPPRGGPGAPPPPGMRPPPGAPGGGGG 807
>Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical
protein C02C6.1a protein.
Length = 830
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/48 (31%), Positives = 15/48 (31%)
Frame = +3
Query: 789 PXXXSXFPXPXXFTXNTXSXLFPPXGXXGGPXPXXXPPXXGFPXXXGG 932
P S P P PP G G P P P G P GG
Sbjct: 760 PSGPSPVPRPAPAPPGGRQAPMPPRGGPGAPPPPGMRPPPGAPGGGGG 807
>L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein.
Length = 830
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/48 (31%), Positives = 15/48 (31%)
Frame = +3
Query: 789 PXXXSXFPXPXXFTXNTXSXLFPPXGXXGGPXPXXXPPXXGFPXXXGG 932
P S P P PP G G P P P G P GG
Sbjct: 760 PSGPSPVPRPAPAPPGGRQAPMPPRGGPGAPPPPGMRPPPGAPGGGGG 807
>AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein.
Length = 838
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/48 (31%), Positives = 15/48 (31%)
Frame = +3
Query: 789 PXXXSXFPXPXXFTXNTXSXLFPPXGXXGGPXPXXXPPXXGFPXXXGG 932
P S P P PP G G P P P G P GG
Sbjct: 760 PSGPSPVPRPAPAPPGGRQAPMPPRGGPGAPPPPGMRPPPGAPGGGGG 807
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.7 bits (61), Expect = 6.4
Identities = 17/54 (31%), Positives = 18/54 (33%)
Frame = +2
Query: 758 PGXSPPGKXPPXXPLXXPXPXPVYXEYXXPPFSPXXXXRXAXSPXXPPPXRVSP 919
P PPG PP P P P PP P P PPP +P
Sbjct: 743 PPPPPPGGLPPISG-GPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 795
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.7 bits (61), Expect = 6.4
Identities = 17/54 (31%), Positives = 18/54 (33%)
Frame = +2
Query: 758 PGXSPPGKXPPXXPLXXPXPXPVYXEYXXPPFSPXXXXRXAXSPXXPPPXRVSP 919
P PPG PP P P P PP P P PPP +P
Sbjct: 743 PPPPPPGGLPPISG-GPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 795
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.7 bits (61), Expect = 6.4
Identities = 17/54 (31%), Positives = 18/54 (33%)
Frame = +2
Query: 758 PGXSPPGKXPPXXPLXXPXPXPVYXEYXXPPFSPXXXXRXAXSPXXPPPXRVSP 919
P PPG PP P P P PP P P PPP +P
Sbjct: 326 PPPPPPGGLPPISG-GPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 378
>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical
protein R03E1.1 protein.
Length = 1043
Score = 28.3 bits (60), Expect = 8.4
Identities = 14/46 (30%), Positives = 16/46 (34%)
Frame = +2
Query: 761 GXSPPGKXPPXXPLXXPXPXPVYXEYXXPPFSPXXXXRXAXSPXXP 898
G SP + PP P P PV PP +P P P
Sbjct: 228 GISPSTRVPPPIPSRAPVMSPVQSPLTHPPVAPMPRCPPPLPPRTP 273
>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
Length = 1043
Score = 28.3 bits (60), Expect = 8.4
Identities = 14/46 (30%), Positives = 16/46 (34%)
Frame = +2
Query: 761 GXSPPGKXPPXXPLXXPXPXPVYXEYXXPPFSPXXXXRXAXSPXXP 898
G SP + PP P P PV PP +P P P
Sbjct: 228 GISPSTRVPPPIPSRAPVMSPVQSPLTHPPVAPMPRCPPPLPPRTP 273
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,094,113
Number of Sequences: 27780
Number of extensions: 301545
Number of successful extensions: 844
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2433684176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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