Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_E20
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    33   0.071
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    30   0.50 
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    27   4.7  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    27   4.7  
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom...    26   6.1  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   6.1  

>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1429

 Score = 32.7 bits (71), Expect = 0.071
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +1

Query: 367  LAPPKYEVRPSLGEKFQSQNVREIIVTTMQEQLMGRKYRSDQAPRWTEEI 516
            LA  KY+V    G+    + ++ IIVT  Q+     K R   +P W EEI
Sbjct: 1326 LAQKKYKVYVGQGKNMPHKTIK-IIVTDNQDHSFKTKSRKGPSPSWNEEI 1374


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 19/76 (25%), Positives = 37/76 (48%)
 Frame = -3

Query: 594 FYHDTLYQNFVPFHIQVLNSLSNSVSDFLCPSRRLIRPILSTHQLFLHCRYDDLANILRL 415
           F  D+  ++F   H   L   S S+  +    R+ +  IL ++Q  +    D  AN+L+ 
Sbjct: 264 FSGDSSLKSF-SLHFFALQFFSTSLIQYTHICRKCVITILQSYQQLI---VDQPANLLKF 319

Query: 414 KFFAQRRAHFIFRWSQ 367
              +++ +HF+F  +Q
Sbjct: 320 SLLSKKVSHFLFTLAQ 335


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -3

Query: 645 FRIPHAPLCAFHPGAFHFYHDTLYQNFVP 559
           F + H PL ++ P  + ++  T+  NF+P
Sbjct: 179 FFVDHPPLSSYSPFLWFYFFITIVGNFIP 207


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 504 PSRRLIRPILSTHQLFLHCRYDDLANI 424
           P +RL+ P L  H +F H   +DLA++
Sbjct: 203 PEKRLLSP-LEVHTIFTHISSEDLAHL 228


>SPCC63.03 |||DNAJ domain protein, DNAJC11
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 642

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 17/73 (23%), Positives = 33/73 (45%)
 Frame = +1

Query: 361 KPLAPPKYEVRPSLGEKFQSQNVREIIVTTMQEQLMGRKYRSDQAPRWTEEIANRVRQRV 540
           K  A  K+++     E     + +EI      EQ +   +      +  EE+ N++R+++
Sbjct: 45  KAAAEEKFQIIQHAYEVLSDPSKKEIY-DNFGEQGLKTDWNVGFPGKSAEELKNKIREQI 103

Query: 541 QDLDMKRYKILVQ 579
           Q+ D+     LVQ
Sbjct: 104 QERDIHEIDSLVQ 116


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 641  GSHMHRCAHFTPAPFISIMIHC 576
            G H H+ +H  P   I +++HC
Sbjct: 1062 GIHFHKLSHKNPNEIIRMILHC 1083


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,973,686
Number of Sequences: 5004
Number of extensions: 57445
Number of successful extensions: 118
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)