Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_E20
         (878 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40938-8|AAA81699.1|  123|Caenorhabditis elegans Hypothetical pr...    71   1e-12
U61948-1|AAB03144.2| 1432|Caenorhabditis elegans Hypothetical pr...    29   4.4  

>U40938-8|AAA81699.1|  123|Caenorhabditis elegans Hypothetical
           protein D1009.5 protein.
          Length = 123

 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 33/115 (28%), Positives = 66/115 (57%), Gaps = 1/115 (0%)
 Frame = +1

Query: 382 YEVRPSLGEKFQSQNVREIIVTTMQEQLMGRK-YRSDQAPRWTEEIANRVRQRVQDLDMK 558
           + +RP+ G+KF+ + V  +I   + E+L     Y  D+A   +++I+  +R+R++ L + 
Sbjct: 9   FVLRPTPGQKFRPKAVAGMIQEILGEKLGALTIYNVDEAELVSKDISASIRERLKGLQLP 68

Query: 559 RYKILVQCIMIEMKGAGVKCAQRCMWDPETDDYVGDLFRNETIYCYTVAYGIYMY 723
           RYK ++Q ++ E  G G   A +C+WD + D Y+   +   +I+C  + + I+ Y
Sbjct: 69  RYKYVIQTMIAEQCGNGATTAVQCVWDEDCDGYLTQRYVTGSIWCEVLVFAIFHY 123


>U61948-1|AAB03144.2| 1432|Caenorhabditis elegans Hypothetical protein
            C46A5.4 protein.
          Length = 1432

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +2

Query: 608  G*NAHSGACGIRKRMTMSAIYSEMKLYIVTLLRTAY 715
            G NA+   CG+RK    S +   M    VT L TAY
Sbjct: 1213 GYNAYRKHCGLRKASAFSDLRDVMNSEAVTALETAY 1248


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,466,381
Number of Sequences: 27780
Number of extensions: 325346
Number of successful extensions: 629
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)