Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_E17
(945 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 35 0.074
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 35 0.074
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 35 0.074
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 33 0.22
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 31 1.2
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 2.1
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 2.1
AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen pro... 30 2.1
U58758-7|AAO38576.1| 220|Caenorhabditis elegans Hypothetical pr... 30 2.8
U58758-4|AAK68614.1| 914|Caenorhabditis elegans Hypothetical pr... 30 2.8
U58758-3|AAK68615.1| 905|Caenorhabditis elegans Hypothetical pr... 30 2.8
AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen prot... 29 3.7
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 3.7
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 3.7
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 3.7
U80451-8|AAB37842.2| 288|Caenorhabditis elegans Collagen protei... 29 6.4
AC006834-6|AAF40004.1| 233|Caenorhabditis elegans Hypothetical ... 29 6.4
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 28 8.5
U41031-3|AAA82620.1| 164|Caenorhabditis elegans Hypothetical pr... 28 8.5
U20864-9|AAC46661.1| 123|Caenorhabditis elegans Lsm sm-like pro... 28 8.5
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 28 8.5
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 28 8.5
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 28 8.5
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 28 8.5
AC006696-4|AAF39985.1| 215|Caenorhabditis elegans Hypothetical ... 28 8.5
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 35.1 bits (77), Expect = 0.074
Identities = 17/34 (50%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Frame = -1
Query: 636 PXGPPXXXGG----PX*PPPGGGXGXXPPPPXXG 547
P PP GG P PPPGG G PPPP G
Sbjct: 758 PPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPG 791
Score = 34.7 bits (76), Expect = 0.097
Identities = 17/34 (50%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Frame = -1
Query: 636 PXGPPXXXGGPX*PPPGGG----XGXXPPPPXXG 547
P G P GGP PPP GG G PPPP G
Sbjct: 716 PPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPG 749
Score = 34.7 bits (76), Expect = 0.097
Identities = 16/31 (51%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = -1
Query: 636 PXG-PPXXXGGPX*PPPGGGXGXXPPPPXXG 547
P G PP G P PPP GG PPPP G
Sbjct: 748 PGGLPPISGGPPPPPPPPGGCPPPPPPPPPG 778
Score = 33.9 bits (74), Expect = 0.17
Identities = 17/35 (48%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
Frame = -1
Query: 636 PXGPPXXXGGPX*PPPGGG-----XGXXPPPPXXG 547
P G P GGP PPP GG G PPPP G
Sbjct: 732 PGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPG 766
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +1
Query: 832 PXXXXPPXXAXPWGXXPXXXXXPXPPXPRGGGXP 933
P PP P G P P PP P GG P
Sbjct: 737 PITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPP 770
Score = 28.7 bits (61), Expect = 6.4
Identities = 21/85 (24%), Positives = 22/85 (25%), Gaps = 1/85 (1%)
Frame = +1
Query: 241 PPXXGGXGPPPXKKXXXXGRPPPXXXXXKKRFF-SKXXAGXGXCXPPXTXKKKXXPPPGX 417
PP GG PPP G PPP PP + PPP
Sbjct: 707 PPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPG 766
Query: 418 XXXXXXXXXXXXXXXXXKXPPPPXG 492
PPPP G
Sbjct: 767 GCPPPPPPPPPGGFKGGPPPPPPPG 791
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 35.1 bits (77), Expect = 0.074
Identities = 17/34 (50%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Frame = -1
Query: 636 PXGPPXXXGG----PX*PPPGGGXGXXPPPPXXG 547
P PP GG P PPPGG G PPPP G
Sbjct: 758 PPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPG 791
Score = 34.7 bits (76), Expect = 0.097
Identities = 17/34 (50%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Frame = -1
Query: 636 PXGPPXXXGGPX*PPPGGG----XGXXPPPPXXG 547
P G P GGP PPP GG G PPPP G
Sbjct: 716 PPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPG 749
Score = 34.7 bits (76), Expect = 0.097
Identities = 16/31 (51%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = -1
Query: 636 PXG-PPXXXGGPX*PPPGGGXGXXPPPPXXG 547
P G PP G P PPP GG PPPP G
Sbjct: 748 PGGLPPISGGPPPPPPPPGGCPPPPPPPPPG 778
Score = 33.9 bits (74), Expect = 0.17
Identities = 17/35 (48%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
Frame = -1
Query: 636 PXGPPXXXGGPX*PPPGGG-----XGXXPPPPXXG 547
P G P GGP PPP GG G PPPP G
Sbjct: 732 PGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPG 766
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +1
Query: 832 PXXXXPPXXAXPWGXXPXXXXXPXPPXPRGGGXP 933
P PP P G P P PP P GG P
Sbjct: 737 PITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPP 770
Score = 28.7 bits (61), Expect = 6.4
Identities = 21/85 (24%), Positives = 22/85 (25%), Gaps = 1/85 (1%)
Frame = +1
Query: 241 PPXXGGXGPPPXKKXXXXGRPPPXXXXXKKRFF-SKXXAGXGXCXPPXTXKKKXXPPPGX 417
PP GG PPP G PPP PP + PPP
Sbjct: 707 PPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPG 766
Query: 418 XXXXXXXXXXXXXXXXXKXPPPPXG 492
PPPP G
Sbjct: 767 GCPPPPPPPPPGGFKGGPPPPPPPG 791
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 35.1 bits (77), Expect = 0.074
Identities = 17/34 (50%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Frame = -1
Query: 636 PXGPPXXXGG----PX*PPPGGGXGXXPPPPXXG 547
P PP GG P PPPGG G PPPP G
Sbjct: 341 PPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPG 374
Score = 34.7 bits (76), Expect = 0.097
Identities = 17/34 (50%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Frame = -1
Query: 636 PXGPPXXXGGPX*PPPGGG----XGXXPPPPXXG 547
P G P GGP PPP GG G PPPP G
Sbjct: 299 PPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPG 332
Score = 34.7 bits (76), Expect = 0.097
Identities = 16/31 (51%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = -1
Query: 636 PXG-PPXXXGGPX*PPPGGGXGXXPPPPXXG 547
P G PP G P PPP GG PPPP G
Sbjct: 331 PGGLPPISGGPPPPPPPPGGCPPPPPPPPPG 361
Score = 33.9 bits (74), Expect = 0.17
Identities = 17/35 (48%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
Frame = -1
Query: 636 PXGPPXXXGGPX*PPPGGG-----XGXXPPPPXXG 547
P G P GGP PPP GG G PPPP G
Sbjct: 315 PGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPG 349
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +1
Query: 832 PXXXXPPXXAXPWGXXPXXXXXPXPPXPRGGGXP 933
P PP P G P P PP P GG P
Sbjct: 320 PITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPP 353
Score = 28.7 bits (61), Expect = 6.4
Identities = 21/85 (24%), Positives = 22/85 (25%), Gaps = 1/85 (1%)
Frame = +1
Query: 241 PPXXGGXGPPPXKKXXXXGRPPPXXXXXKKRFF-SKXXAGXGXCXPPXTXKKKXXPPPGX 417
PP GG PPP G PPP PP + PPP
Sbjct: 290 PPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPG 349
Query: 418 XXXXXXXXXXXXXXXXXKXPPPPXG 492
PPPP G
Sbjct: 350 GCPPPPPPPPPGGFKGGPPPPPPPG 374
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 33.5 bits (73), Expect = 0.22
Identities = 16/33 (48%), Positives = 17/33 (51%)
Frame = -1
Query: 645 GFLPXGPPXXXGGPX*PPPGGGXGXXPPPPXXG 547
GF+P PP GG PPP G PPPP G
Sbjct: 72 GFIP--PPPGPGGIPPPPPMFAGGIPPPPPMMG 102
Score = 32.3 bits (70), Expect = 0.52
Identities = 16/33 (48%), Positives = 17/33 (51%)
Frame = -1
Query: 645 GFLPXGPPXXXGGPX*PPPGGGXGXXPPPPXXG 547
G +P PP GG PPP G G PPPP G
Sbjct: 81 GGIPPPPPMFAGGIPPPPPMMG-GIPPPPPMFG 112
Score = 31.9 bits (69), Expect = 0.69
Identities = 18/45 (40%), Positives = 19/45 (42%)
Frame = -1
Query: 690 PLGXGGXXWRXXXXXGFLPXGPPXXXGGPX*PPPGGGXGXXPPPP 556
P G GG G +P PP G P PPP G PPPP
Sbjct: 77 PPGPGGIPPPPPMFAGGIPPPPPMMGGIPP-PPPMFGAPPPPPPP 120
Score = 31.5 bits (68), Expect = 0.91
Identities = 17/45 (37%), Positives = 18/45 (40%)
Frame = -1
Query: 690 PLGXGGXXWRXXXXXGFLPXGPPXXXGGPX*PPPGGGXGXXPPPP 556
P+ GG G P PP G P PPP G G P PP
Sbjct: 88 PMFAGGIPPPPPMMGGIPP--PPPMFGAPPPPPPPSGLGVAPQPP 130
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = -1
Query: 627 PPXXXGGPX*PPPGGGXGXXPPPP 556
PP G PPPG G G PPPP
Sbjct: 66 PPPVPNGFIPPPPGPG-GIPPPPP 88
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 31.1 bits (67), Expect = 1.2
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -1
Query: 630 GPPXXXGGPX*PPPGGGXGXXPPPP 556
GPP G PPP GG G PPP
Sbjct: 424 GPPQGGPGGFGPPPPGGPGAYGPPP 448
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/55 (34%), Positives = 20/55 (36%), Gaps = 4/55 (7%)
Frame = -1
Query: 630 GPPXXXGGPX*P----PPGGGXGXXPPPPXXGXXXFWXXXXXXXXXXXXPPXGGG 478
GPP GGP P PP GG G PPP G + PP G
Sbjct: 410 GPPPP-GGPGAPGSYGPPQGGPGGFGPPPPGGPGAYGPPPTGFPPVGAPPPGAAG 463
Score = 30.3 bits (65), Expect = 2.1
Identities = 18/54 (33%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Frame = -1
Query: 627 PPXXXGGPX*PPPGGGXGXXPPPPXX-GXXXFWXXXXXXXXXXXXPPXGGGGXF 469
PP G P PGG G PPPP G + PP GG G +
Sbjct: 393 PPSAFGAPQ--GPGGPGGYGPPPPGGPGAPGSYGPPQGGPGGFGPPPPGGPGAY 444
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/32 (46%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Frame = -1
Query: 630 GPPXXXGGPX*PPPGG----GXGXXPPPPXXG 547
GPP G P PPP G G PPPP G
Sbjct: 309 GPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPG 340
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/26 (53%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = -1
Query: 630 GPPXXXGGPX*PPPG-GGXGXXPPPP 556
GPP G P PPPG G PPPP
Sbjct: 326 GPPGMGGMPPPPPPGMRYPGGMPPPP 351
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/32 (46%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Frame = -1
Query: 630 GPPXXXGGPX*PPPGG----GXGXXPPPPXXG 547
GPP G P PPP G G PPPP G
Sbjct: 319 GPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPG 350
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/26 (53%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = -1
Query: 630 GPPXXXGGPX*PPPG-GGXGXXPPPP 556
GPP G P PPPG G PPPP
Sbjct: 336 GPPGMGGMPPPPPPGMRYPGGMPPPP 361
>AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen
protein 142 protein.
Length = 325
Score = 30.3 bits (65), Expect = 2.1
Identities = 21/54 (38%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Frame = -1
Query: 711 NPXKEGXPLGXGGXXWRXXXXXGFLPXGPPXXXGGPX*PPPGGGXGXXPP--PP 556
+P G P G GG R P GPP GGP P GG G P PP
Sbjct: 186 HPGSPGNP-GRGGQRSRGLPGPSGRP-GPPGPAGGPGQPGHSGGAGSPGPQGPP 237
>U58758-7|AAO38576.1| 220|Caenorhabditis elegans Hypothetical
protein ZK1127.9d protein.
Length = 220
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/50 (34%), Positives = 17/50 (34%)
Frame = -1
Query: 708 PXKEGXPLGXGGXXWRXXXXXGFLPXGPPXXXGGPX*PPPGGGXGXXPPP 559
P G P G GG G P G P GGP PG P P
Sbjct: 88 PRGRGMPPGRGGYMPPYRGGYGVAPNGGPGAYGGPYNGGPGAYGAQAPGP 137
>U58758-4|AAK68614.1| 914|Caenorhabditis elegans Hypothetical
protein ZK1127.9a protein.
Length = 914
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/50 (34%), Positives = 17/50 (34%)
Frame = -1
Query: 708 PXKEGXPLGXGGXXWRXXXXXGFLPXGPPXXXGGPX*PPPGGGXGXXPPP 559
P G P G GG G P G P GGP PG P P
Sbjct: 97 PRGRGMPPGRGGYMPPYRGGYGVAPNGGPGAYGGPYNGGPGAYGAQAPGP 146
>U58758-3|AAK68615.1| 905|Caenorhabditis elegans Hypothetical
protein ZK1127.9b protein.
Length = 905
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/50 (34%), Positives = 17/50 (34%)
Frame = -1
Query: 708 PXKEGXPLGXGGXXWRXXXXXGFLPXGPPXXXGGPX*PPPGGGXGXXPPP 559
P G P G GG G P G P GGP PG P P
Sbjct: 88 PRGRGMPPGRGGYMPPYRGGYGVAPNGGPGAYGGPYNGGPGAYGAQAPGP 137
>AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen protein
40 protein.
Length = 416
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -1
Query: 636 PXGPPXXXGGPX*PPPGGGXGXXPPPPXXG 547
P GPP G P GGG G PP G
Sbjct: 188 PAGPPGPAGADGNTPSGGGEGPAGPPGPPG 217
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -1
Query: 636 PXGPPXXXGGPX*PPPGGGXGXXPPPPXXG 547
P G P P PP G G PPPP G
Sbjct: 233 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAG 262
Score = 28.7 bits (61), Expect = 6.4
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = -1
Query: 627 PPXXXGGPX*PPPGGGXGXXPPPPXXG 547
PP G P PPP GG PPPP G
Sbjct: 273 PPPPTGSPP-PPPAGG---SPPPPRAG 295
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -1
Query: 636 PXGPPXXXGGPX*PPPGGGXGXXPPPPXXG 547
P G P P PP G G PPPP G
Sbjct: 254 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAG 283
Score = 28.7 bits (61), Expect = 6.4
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = -1
Query: 627 PPXXXGGPX*PPPGGGXGXXPPPPXXG 547
PP G P PPP GG PPPP G
Sbjct: 294 PPPPTGSPP-PPPAGG---SPPPPRAG 316
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -1
Query: 636 PXGPPXXXGGPX*PPPGGGXGXXPPPPXXG 547
P G P P PP G G PPPP G
Sbjct: 239 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAG 268
Score = 28.7 bits (61), Expect = 6.4
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = -1
Query: 627 PPXXXGGPX*PPPGGGXGXXPPPPXXG 547
PP G P PPP GG PPPP G
Sbjct: 279 PPPPTGSPP-PPPAGG---SPPPPRAG 301
>U80451-8|AAB37842.2| 288|Caenorhabditis elegans Collagen protein
20 protein.
Length = 288
Score = 28.7 bits (61), Expect = 6.4
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -1
Query: 636 PXGPPXXXGGPX*PPPGGGXGXXPPPPXXG 547
P GPP GG P P G G PP G
Sbjct: 157 PKGPPGPPGGHGEPGPAGRGGPRGPPGPGG 186
>AC006834-6|AAF40004.1| 233|Caenorhabditis elegans Hypothetical
protein ZK973.9 protein.
Length = 233
Score = 28.7 bits (61), Expect = 6.4
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = -1
Query: 636 PXGPPXXXGGPX*PPPGGGXGXXPPPPXXG 547
P G P GGP PPP G G PP G
Sbjct: 202 PQGMPGYPGGPP-PPPHGYEGYPPPGAQPG 230
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -3
Query: 883 GGXXPRGGXXXGGXXRGGXGG 821
GG RGG GG RGG GG
Sbjct: 106 GGGGGRGGGGGGGGGRGGGGG 126
>U41031-3|AAA82620.1| 164|Caenorhabditis elegans Hypothetical
protein C16B8.3 protein.
Length = 164
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -1
Query: 624 PXXXGGPX*PPPGGGXGXXPPPP 556
P G P PP G G G PPPP
Sbjct: 34 PLPYGAPP-PPVGAGVGYAPPPP 55
>U20864-9|AAC46661.1| 123|Caenorhabditis elegans Lsm sm-like
protein protein 4 protein.
Length = 123
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -3
Query: 883 GGXXPRGGXXXGGXXRGGXGG 821
GG RGG GG RGG GG
Sbjct: 101 GGRGGRGGHRGGGGNRGGRGG 121
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 28.3 bits (60), Expect = 8.5
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -1
Query: 597 PPPGGGXGXXPPPP 556
PPPGG G PPPP
Sbjct: 664 PPPGGLGGFMPPPP 677
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -1
Query: 630 GPPXXXGGPX*PPPGGGXGXXPPPP 556
GPP GP PP G PPPP
Sbjct: 672 GPPGGGQGPPPPPQGQQYYGGPPPP 696
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 28.3 bits (60), Expect = 8.5
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -1
Query: 597 PPPGGGXGXXPPPP 556
PPPGG G PPPP
Sbjct: 664 PPPGGLGGFMPPPP 677
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -1
Query: 630 GPPXXXGGPX*PPPGGGXGXXPPPP 556
GPP GP PP G PPPP
Sbjct: 672 GPPGGGQGPPPPPQGQQYYGGPPPP 696
>AC006696-4|AAF39985.1| 215|Caenorhabditis elegans Hypothetical
protein W08E12.6 protein.
Length = 215
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -1
Query: 630 GPPXXXGGPX*PPPGGGXGXXPPPP 556
GPP G P PPP G PPPP
Sbjct: 142 GPPPCFG-PACPPPCFGPACAPPPP 165
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,494,543
Number of Sequences: 27780
Number of extensions: 235531
Number of successful extensions: 1454
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1226
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2444174194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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