Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_E16
         (855 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    27   2.6  
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    26   7.8  

>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 9/33 (27%), Positives = 20/33 (60%)
 Frame = -3

Query: 142 LRDYYEMFRHKLI*TIDKRADKLQINHAIQQFK 44
           LR+ ++  ++ ++ T DK+     +NH +QQ +
Sbjct: 769 LRENFDSLQNAIMETFDKQVTHCSVNHLVQQIR 801


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -1

Query: 408 FFNVPFQSFLVHQVLLLCVNWSQEIIF*LNGKVLDQIHLWNYL*NR 271
           F  +PF     H  ++LCVN+S   +F  +      I +W+   N+
Sbjct: 209 FPKLPFLKLAAHNGVVLCVNYSPNGVFLASCGRDKTIRIWDSTSNK 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,523,758
Number of Sequences: 5004
Number of extensions: 41528
Number of successful extensions: 70
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)