Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_E16
         (855 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1465 + 33794225-33794389,33794471-33794597,33794669-337947...    31   1.2  
05_03_0582 - 15738503-15739301,15739385-15739642,15740585-157406...    28   8.3  

>04_04_1465 +
           33794225-33794389,33794471-33794597,33794669-33794799,
           33795153-33795254,33795337-33795420,33795504-33795731,
           33795934-33796038,33796376-33796731,33797146-33797303,
           33797399-33797505,33797852-33798061
          Length = 590

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
 Frame = +3

Query: 246 VAVITVSDTCFKDNSKDESGPALCHLV----KKLFPDSNLHTIIVPDEREMIE 392
           VA++TVSDT       D SGP    +V    +KL   + + T +VPD+ E I+
Sbjct: 415 VAILTVSDTVSLGAGPDRSGPRAISVVNSSSEKLGGATVVATAVVPDDVEKIK 467


>05_03_0582 -
           15738503-15739301,15739385-15739642,15740585-15740670,
           15740879-15740960,15741044-15741213,15742081-15742194,
           15742984-15743082,15743171-15743249,15744604-15744710
          Length = 597

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -3

Query: 349 LESGNNFLTKWQSAGPDSSLELSLKQVSLTVMTATAFIIFSKYFE 215
           L+  N+F    +SAGP S +  S KQ         +++  +KYF+
Sbjct: 525 LQQSNSFGVPLRSAGPQSPINGSTKQPMSAGARRPSYVSSNKYFD 569


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,668,801
Number of Sequences: 37544
Number of extensions: 213386
Number of successful extensions: 312
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)