Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_E15
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces...    27   3.5  
SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos...    27   4.7  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    26   8.2  

>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 208

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 152 PKNEDASEEAKKIVDDAKNF 211
           P  ++A EEAK I ++AKNF
Sbjct: 154 PITQEAVEEAKPITEEAKNF 173


>SPBP35G2.05c |cki2||serine/threonine protein kinase
           Cki2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 376 FLACNV*KNDSTSKSNSCYFSNLHRYKTSY 287
           +L  NV +ND + K NS   +   R+K+SY
Sbjct: 322 YLGLNVVQNDDSRKKNSTLQTQNMRFKSSY 351


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 410 KKVDKISDKIEKEATGKSPELV*K 481
           K V+  S K E E  GK+PE+V K
Sbjct: 874 KSVENDSGKAETETVGKNPEVVRK 897


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,130,483
Number of Sequences: 5004
Number of extensions: 35052
Number of successful extensions: 111
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)