Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_E14
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.13 |trf1||telomeric DNA binding factor Trf1|Schizosacch...    29   1.2  
SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|ch...    26   8.3  
SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha...    26   8.3  

>SPBC19G7.13 |trf1||telomeric DNA binding factor
           Trf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = -3

Query: 503 LLAVLVDTSICILXVXHFSLSESFSFPPIPLSIL*FAFSKPPPLFRYISDILYVQEFLY 327
           L+  L + S  IL +    + E+ +    P S +  AF+K   +FR + DI   + F+Y
Sbjct: 101 LIPTLGNLSNIILSILGKPVQEASAIVTNPASEMGMAFTKVMNMFRMVKDIYTEESFIY 159


>SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 372

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -3

Query: 383 PPPLFRYISDILYVQEFL-YDIFR*VSIPNLSTSSHIFHAEFFLLQ 249
           PPP ++ + D+  VQE +  D++R +    LS      H ++F  Q
Sbjct: 105 PPPSYQELEDVYIVQELMETDLYRVIRSQPLSDD----HCQYFTYQ 146


>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 425 PPIPLSIL*FAFSKPPPLFRYISDILYVQEF 333
           PP+P+ +L +  + PPPL      I + + F
Sbjct: 286 PPMPIELLSYIINMPPPLLPQEPGIKWSKSF 316


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,275,594
Number of Sequences: 5004
Number of extensions: 38918
Number of successful extensions: 159
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)