Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_E13
(890 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 32 0.095
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 32 0.13
SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosacchar... 30 0.38
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 29 1.2
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 29 1.2
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 29 1.2
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 28 2.1
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 27 2.7
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 27 3.6
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p... 27 3.6
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|... 27 4.7
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 26 6.3
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 26 6.3
SPCC569.08c |ade5|ade8|phosphoribosylglycinamide formyltransfera... 26 8.3
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 32.3 bits (70), Expect = 0.095
Identities = 17/91 (18%), Positives = 44/91 (48%)
Frame = +2
Query: 467 TNNFIVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYKAIE 646
T N I++ + + + HEE + ELR++++++++ E+ ++ E+Y+
Sbjct: 85 TLNNILSMRTETGSMAKAHEEVSQQINTELRNKIREYIDQTEQQKVVAANAIEELYQKKT 144
Query: 647 DXMTTAADKRDENLKXMIERLREHEEQXRKV 739
++K+D + +L + Q +K+
Sbjct: 145 ALEIDLSEKKDA-YEYSCNKLNSYMRQTKKM 174
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 31.9 bits (69), Expect = 0.13
Identities = 21/66 (31%), Positives = 31/66 (46%)
Frame = +2
Query: 452 IRSEQTNNFIVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEV 631
+ SE+T + T E +E+ RE I LRS L D + VE + E + E+
Sbjct: 974 LASEKTLEMMNETHEQFKHLVESEISTREEKITSLRSELLDLNKRVEVLKEEKESSSKEL 1033
Query: 632 YKAIED 649
K +ED
Sbjct: 1034 AKQLED 1039
>SPAC19A8.07c |||U3 snoRNP-associated protein Imp4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 289
Score = 30.3 bits (65), Expect = 0.38
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Frame = +2
Query: 485 ATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQ--QTAEVYKAIEDXMT 658
A +E + ++E +EA +NE R L+ LEG ++ L++ Q + YK E T
Sbjct: 5 AVRERRQFIYKRNQELQEAKLNEKRRALRKALEGNKELNKDLQEDSQLQKDYKYDESRAT 64
Query: 659 TAADKRDENLKXMIERLREHE 721
++ + NL RL E E
Sbjct: 65 --QEETETNLDDEYHRLGERE 83
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 28.7 bits (61), Expect = 1.2
Identities = 18/64 (28%), Positives = 29/64 (45%)
Frame = +2
Query: 197 AMEVETKSTEIRCQEMSKGGLAYEVILAEPVGVPVPRRADSPEKTPSVEEIQEKLKAAEE 376
A+ ETKST ++ GG A +A P +P P +P P+ E +++
Sbjct: 867 AITPETKST---VNQIMSGGEALAAPVAVPAPIPAPVAEPAPPAAPAKEVVEKAPSPPAT 923
Query: 377 RRRS 388
R +S
Sbjct: 924 RPKS 927
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 28.7 bits (61), Expect = 1.2
Identities = 16/84 (19%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Frame = +2
Query: 494 EALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYKAIE--DXMTTAA 667
E L K+++ ++++ INEL R+K + V + T+++ ++ E + + A
Sbjct: 530 EGLTLKIDSITKEKDRLINELEQRIKSYEVNVSELNGTIDEYRNKLKDKEETYNEVMNAF 589
Query: 668 DKRDENLKXMIERLREHEEQXRKV 739
+D +L+ E + + +++ +++
Sbjct: 590 QYKDNDLRRFHESINKLQDREKEL 613
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 28.7 bits (61), Expect = 1.2
Identities = 22/82 (26%), Positives = 35/82 (42%)
Frame = +2
Query: 491 KEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYKAIEDXMTTAAD 670
K + E +EK+ R++ + E+ + E+Q E K + + AA
Sbjct: 65 KRIYNGSAEAGKEKKLQKQRAQEERIRQ--KEAERLKREKERQQREQEKKLREQEKIAAK 122
Query: 671 KRDENLKXMIERLREHEEQXRK 736
K E K ER+R E+Q RK
Sbjct: 123 KMKELEKLEKERIRLQEQQRRK 144
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +2
Query: 146 SSDAIQLFRSLCRLKVEAMEVETKSTEIRCQEMSKGGLAYE 268
S D L+ L R + +E E ++ +C E K L YE
Sbjct: 2534 SLDEHDLYHGLWRRRANFLETEVATSHEQCHEWEKAQLVYE 2574
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 27.5 bits (58), Expect = 2.7
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Frame = +2
Query: 485 ATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYK-AIEDXMTT 661
A K+ + +++ +EK++ + + K + EK +L +QQ A+ K A E +
Sbjct: 637 ARKKREEQRLKREQEKKQQELERQKREEKQKQKEREK-KLKKQQQEADREKMAREQRLRE 695
Query: 662 AADKRDENLKXMIERLREHEEQXRK 736
+KR + E+L + EE+ R+
Sbjct: 696 EEEKRILEERKRREKLDKEEEERRR 720
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 27.1 bits (57), Expect = 3.6
Identities = 20/90 (22%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Frame = +2
Query: 461 EQTNNFIVATKEA-LDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYK 637
+Q VA ++A +E K E + + + SR+K + +E TRL + Q
Sbjct: 460 KQVEELTVALNSGKMNAIVEAESSKNELWDSMMVSRMKTQEQSIELTRLYKQLQD----- 514
Query: 638 AIEDXMTTAADKRDENLKXMIERLREHEEQ 727
IE+ + ++ + +++L+E+ E+
Sbjct: 515 -IEEDYENKLMRMEQQWREDVDQLQEYVEE 543
>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 27.1 bits (57), Expect = 3.6
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = +1
Query: 355 EAEGSRREET*LGS**DGRHCSEDGQDRGSVSHPQRADE*LH 480
EAE R + LG G+HCSE G S P+ LH
Sbjct: 320 EAEAKARRDKRLGELLTGKHCSECGTPLYSDPSPEELGIWLH 361
>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
Length = 624
Score = 26.6 bits (56), Expect = 4.7
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = +2
Query: 545 INELRSRLKDHLEGVEKTRLTLEQQTAEVYKAIEDXMTTAADKRDENLKXMIERLR 712
+N+L + L+D L G+E +RLT + + A D + L+ +++L+
Sbjct: 494 VNDLIAELQDELRGIE-SRLTSVLSECNMLRETASEEKNAFDAESDKLERELQQLK 548
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 152 DAIQLFRSLCRLKVEAMEVETKSTEIRCQEM 244
DA +FRS+CRL V + K + IR Q M
Sbjct: 388 DAFLVFRSMCRLAVRQTSPD-KVSNIRSQAM 417
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 26.2 bits (55), Expect = 6.3
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +2
Query: 611 EQQTAEVYKAIEDXMTTAADKRDENLKXMIERLREHEEQ 727
E + AE K I D ++K DE L+ + ERLRE EE+
Sbjct: 169 ENRRAESNK-IMDETIQKSEKIDELLQYIEERLRELEEE 206
>SPCC569.08c |ade5|ade8|phosphoribosylglycinamide
formyltransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 207
Score = 25.8 bits (54), Expect = 8.3
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 251 GGLAYEVILAEPVGVPVPRRADSPEKTPSVEEIQEKLKAAE 373
G + + VI A G P+ + T S+E ++EK+ AAE
Sbjct: 151 GAMVHWVIAAVDEGKPIIVQEVPILSTDSIEALEEKIHAAE 191
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,262,670
Number of Sequences: 5004
Number of extensions: 34701
Number of successful extensions: 161
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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