Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_E12
         (877 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   177   2e-45
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   2.0  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    27   4.6  
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p...    26   8.1  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  177 bits (430), Expect = 2e-45
 Identities = 78/105 (74%), Positives = 98/105 (93%)
 Frame = +1

Query: 223 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 402
           ++++KEWVPVTKLGRLV+ GKI  +E IYL+SLPIKE++I+D+FL P LNDEV+K++PVQ
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQ 86

Query: 403 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILG 537
           KQTRAGQRTRFKAFV IGD++GH+GLG+KC+KEVATAIRGAII+G
Sbjct: 87  KQTRAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVATAIRGAIIMG 131



 Score =  124 bits (299), Expect = 2e-29
 Identities = 53/95 (55%), Positives = 70/95 (73%), Gaps = 1/95 (1%)
 Frame = +2

Query: 494 ARKSPLPFEALLSLAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTG 673
           A++        + + KLS++P+RRGYWG  +G PHTVP KV+GKCGSVTVRL+PAPRG G
Sbjct: 117 AKEVATAIRGAIIMGKLSIMPIRRGYWGTALGDPHTVPVKVSGKCGSVTVRLVPAPRGAG 176

Query: 674 IVSAPVPKKLLQMAGVQDCYTSARVHWH-FGNFAK 775
           +V+APV K+ LQ+AG++DCYT +R      GNF K
Sbjct: 177 LVAAPVTKRFLQLAGIEDCYTQSRGSTKTLGNFVK 211


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -1

Query: 220 RAHDHGRDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPP 95
           ++HDHG  H + H DR      +  R  R++R     ++ PP
Sbjct: 720 QSHDHGHSHSKSH-DREKEKEKKKDREHRKHRETEEEDEGPP 760


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +3

Query: 696 RSFFRWLVYRTATPQLV 746
           RS F+WL+  TATP+L+
Sbjct: 69  RSVFQWLIALTATPRLL 85


>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 252

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 589 KATHRPLQGHRQVWFCNSPADSCPSWYWN 675
           +A    L G  +   C   + SCPS++WN
Sbjct: 153 RADRAKLDGLYECILCACCSTSCPSYWWN 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,594,670
Number of Sequences: 5004
Number of extensions: 77594
Number of successful extensions: 224
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)