Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_E12
(877 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 165 5e-41
07_01_0756 + 5819367-5820038,5820847-5821005 160 2e-39
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 69 5e-12
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 47 2e-05
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509... 29 4.9
09_02_0092 + 4173741-4175417 28 8.5
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 165 bits (400), Expect = 5e-41
Identities = 74/104 (71%), Positives = 92/104 (88%)
Frame = +1
Query: 223 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 402
++++++WVPVTKLGRLV+EG+ K+E IYL SLP+KE +I++ + P L DEV+KI PVQ
Sbjct: 38 RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVKEHQIVETLV-PGLKDEVMKITPVQ 96
Query: 403 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIIL 534
KQTRAGQRTRFKAFV +GDNNGH+GLGVKC+KEVATAIRGAIIL
Sbjct: 97 KQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKEVATAIRGAIIL 140
Score = 136 bits (328), Expect = 3e-32
Identities = 62/95 (65%), Positives = 76/95 (80%), Gaps = 1/95 (1%)
Frame = +2
Query: 494 ARKSPLPFEALLSLAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTG 673
A++ + LAKLSV+PVRRGYWGNKIG+PHTVPCKVTGKCGSVTVR++PAPRG+G
Sbjct: 127 AKEVATAIRGAIILAKLSVVPVRRGYWGNKIGQPHTVPCKVTGKCGSVTVRMVPAPRGSG 186
Query: 674 IVSAPVPKKLLQMAGVQDCYTSARVHWH-FGNFAK 775
IV+A VPKK+LQ AG++D +TS+R GNF K
Sbjct: 187 IVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVK 221
Score = 30.7 bits (66), Expect = 1.6
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 786 CHCQTYAYLTPDLWRDIR 839
C +TY +LTPD WRD +
Sbjct: 226 CLMKTYGFLTPDFWRDTK 243
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 160 bits (388), Expect = 2e-39
Identities = 73/104 (70%), Positives = 91/104 (87%)
Frame = +1
Query: 223 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 402
++++++WVPVTKLGRLV+E KI K+E IYL SLP+KE +I++ + P L DEV+KI PVQ
Sbjct: 41 RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVKEHQIVEQLV-PGLKDEVMKITPVQ 99
Query: 403 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIIL 534
KQTRAGQRTRFKAFV +GD +GH+GLGVKC+KEVATAIRGAIIL
Sbjct: 100 KQTRAGQRTRFKAFVVVGDGDGHVGLGVKCAKEVATAIRGAIIL 143
Score = 137 bits (332), Expect = 9e-33
Identities = 63/95 (66%), Positives = 76/95 (80%), Gaps = 1/95 (1%)
Frame = +2
Query: 494 ARKSPLPFEALLSLAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTG 673
A++ + LAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR++PAPRG+G
Sbjct: 130 AKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSG 189
Query: 674 IVSAPVPKKLLQMAGVQDCYTSARVHWH-FGNFAK 775
IV+A VPKK+LQ AG++D +TS+R GNF K
Sbjct: 190 IVAAHVPKKVLQFAGIEDVFTSSRGSTKTLGNFVK 224
Score = 30.3 bits (65), Expect = 2.1
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 786 CHCQTYAYLTPDLWRDIR 839
C +TY +LTPD WR+ R
Sbjct: 229 CLMKTYGFLTPDFWRETR 246
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 68.9 bits (161), Expect = 5e-12
Identities = 33/66 (50%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Frame = +2
Query: 590 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARVHWH-FGN 766
KPHTV CKV K GSVTVR++ P G+ +V+ VPKK+L+ AG++D +TS+R N
Sbjct: 47 KPHTVSCKVADKYGSVTVRMMLPPMGSSVVATRVPKKVLKFAGIEDVFTSSRGSTKTLSN 106
Query: 767 FAKPHM 784
F K M
Sbjct: 107 FVKHQM 112
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/42 (50%), Positives = 26/42 (61%)
Frame = +1
Query: 442 FVAIGDNNGHIGLGVKCSKEVATAIRGAIILG*VVCFTSSKR 567
FV +GD + HI LGVKC+K AT + GAIIL C + R
Sbjct: 2 FVVVGDGDSHIELGVKCAK--ATTMSGAIILAMFRCAEGATR 41
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/56 (37%), Positives = 35/56 (62%)
Frame = +1
Query: 370 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILG 537
++ V+++ V K + G++ F+A V +GD GH+G+GV +KEV AI A + G
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNG 226
>11_04_0439 +
17749634-17749858,17750164-17750301,17750770-17750943,
17751099-17751184,17751264-17751525,17751616-17751815,
17753631-17754086,17754198-17754474,17754694-17754828,
17754946-17755026,17756305-17756400,17756676-17756771,
17756844-17756900,17756975-17757043,17757158-17757237,
17758185-17758329,17758422-17758511,17758914-17758994,
17759103-17759198,17759279-17759335,17759417-17759461,
17759547-17759612,17760304-17760350,17762771-17762865,
17763375-17763393,17763438-17763498,17763637-17763660
Length = 1085
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -2
Query: 504 DFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHD 388
+F+A LHT +M V +E C LS F+ +HD
Sbjct: 655 EFIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHD 693
>09_02_0092 + 4173741-4175417
Length = 558
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +2
Query: 665 GTGIVSAPVPKKLLQMAGVQDCYTSARVHWHFGNFAKPHMLPLP 796
G V A +P + +M C+ S +V W G F H P P
Sbjct: 484 GEETVGARLPDEYAEMVDAVACHRSRKVSWWCGGFVL-HFFPSP 526
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,677,080
Number of Sequences: 37544
Number of extensions: 568235
Number of successful extensions: 1600
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1597
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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