Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_E12
         (877 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...   158   6e-39
Z81465-4|CAB03866.3|  613|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AL032646-13|CAA21687.3|  613|Caenorhabditis elegans Hypothetical...    30   1.9  
AY305847-1|AAR11991.1|  461|Caenorhabditis elegans nuclear recep...    28   7.6  
AF099915-4|AAC68773.2|  461|Caenorhabditis elegans Nuclear hormo...    28   7.6  

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score =  158 bits (383), Expect = 6e-39
 Identities = 80/102 (78%), Positives = 86/102 (84%)
 Frame = +1

Query: 226 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQK 405
           E + EW PVTKLGRLV+E KI  LE IYL SLPIKEFEIID  L  +L DEVLKI PVQK
Sbjct: 52  EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEFEIIDA-LCSNLKDEVLKISPVQK 110

Query: 406 QTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAII 531
           QT AGQRTRFKAFVAIGD+ GH+GLGVKCSKEVATAIRGAI+
Sbjct: 111 QTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVATAIRGAIV 152



 Score =  141 bits (341), Expect = 7e-34
 Identities = 65/81 (80%), Positives = 71/81 (87%), Gaps = 1/81 (1%)
 Frame = +2

Query: 536 AKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMA 715
           AKL+V+PVRRGYWGNKIG PHTVPCKVTGKC SV VRLIPAPRGTGIVSAPVPKKLL MA
Sbjct: 154 AKLAVVPVRRGYWGNKIGLPHTVPCKVTGKCASVMVRLIPAPRGTGIVSAPVPKKLLHMA 213

Query: 716 GVQDCYTSARVHW-HFGNFAK 775
           G++DCYT+A+      GNFAK
Sbjct: 214 GIEDCYTAAKGSTATLGNFAK 234



 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +3

Query: 750 TGTLGILLNHICCHCQ-TYAYLTPDLWRD 833
           T TLG          Q TY+YLTPDLW++
Sbjct: 226 TATLGNFAKATYAALQRTYSYLTPDLWKE 254


>Z81465-4|CAB03866.3|  613|Caenorhabditis elegans Hypothetical
           protein Y54E2A.1 protein.
          Length = 613

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -3

Query: 431 RVRCPARVCFCTGMIFRTSSFRD-GPRKKSMISNSLIGKENK*MLSSLSIFPSRTRRPSL 255
           R R P  +   T    R+SS R   P   S +S  +  +       + S+FPSRTR P+L
Sbjct: 522 RPRSPTDLSQSTKPSRRSSSIRPRSPTSTSQMSTIVRSRSPTGASDTSSLFPSRTRSPTL 581

Query: 254 VTGT 243
            + T
Sbjct: 582 QSNT 585


>AL032646-13|CAA21687.3|  613|Caenorhabditis elegans Hypothetical
           protein Y54E2A.1 protein.
          Length = 613

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -3

Query: 431 RVRCPARVCFCTGMIFRTSSFRD-GPRKKSMISNSLIGKENK*MLSSLSIFPSRTRRPSL 255
           R R P  +   T    R+SS R   P   S +S  +  +       + S+FPSRTR P+L
Sbjct: 522 RPRSPTDLSQSTKPSRRSSSIRPRSPTSTSQMSTIVRSRSPTGASDTSSLFPSRTRSPTL 581

Query: 254 VTGT 243
            + T
Sbjct: 582 QSNT 585


>AY305847-1|AAR11991.1|  461|Caenorhabditis elegans nuclear receptor
           NHR-121 protein.
          Length = 461

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = +3

Query: 381 SKDHACTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 524
           +++  CT  NTCR  +  + IC   R  +    G E    Q  R C++ R
Sbjct: 53  NRNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102


>AF099915-4|AAC68773.2|  461|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 121 protein.
          Length = 461

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = +3

Query: 381 SKDHACTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 524
           +++  CT  NTCR  +  + IC   R  +    G E    Q  R C++ R
Sbjct: 53  NRNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,346,394
Number of Sequences: 27780
Number of extensions: 455892
Number of successful extensions: 1287
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1285
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)