Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_E11
         (877 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    29   0.66 
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces...    26   6.1  
SPAC23C11.12 |hcn1||anaphase-promoting complex subunit Hcn1|Schi...    26   8.1  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    26   8.1  
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo...    26   8.1  

>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 15/57 (26%), Positives = 32/57 (56%)
 Frame = +1

Query: 298 MKQTKITKLFQTKLVARRSSDDCDELQDEIEKLRENLKEKQNELFQLQRNSYKHKSS 468
           M++ K  K    +   R+  +  DEL +E++  ++ L EK++E+  L+R   + ++S
Sbjct: 272 MEEDKSNKEVDYEYEIRQLQNRLDELSEELDVAQDLLTEKEDEIATLKRQIEEKENS 328


>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 349 RSSDDCDELQDEIEKLRENLKE 414
           +  ++C ELQ +I  LR+ LKE
Sbjct: 31  KQREECKELQSKITNLRKQLKE 52


>SPAC23C11.12 |hcn1||anaphase-promoting complex subunit
           Hcn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 80

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 367 DELQDEIEKLRENLKEKQNELFQLQRNSYKHKSSPXKEEI 486
           D L  + EKLR+ L  +      LQ+N    + SP K++I
Sbjct: 15  DVLAYDEEKLRQTLDSESTTEEALQKNEESTRLSPEKKKI 54


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/49 (24%), Positives = 26/49 (53%)
 Frame = +1

Query: 364 CDELQDEIEKLRENLKEKQNELFQLQRNSYKHKSSPXKEEI*TICTSTE 510
           C E   ++E L  N+K  + +L  + +++ +HK      ++  + +STE
Sbjct: 481 CQEQARKLEVLDLNVKSSREQLQYVSKSNQEHKKEVEALQLQLVNSSTE 529


>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
           Tip1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 19/74 (25%), Positives = 33/74 (44%)
 Frame = +1

Query: 367 DELQDEIEKLRENLKEKQNELFQLQRNSYKHKSSPXKEEI*TICTSTENSINKLYRQPKE 546
           ++ QDE+++LRE +  K+ E  Q  RN    +    K  I  +  S+  +I + Y     
Sbjct: 174 NDQQDEVDELRERITLKE-ERIQQMRNEASQRRFEFKTTIECLEESSNRAI-ETYENRIA 231

Query: 547 EFRTDVNFNWNGGS 588
           E    +    +G S
Sbjct: 232 ELEAQLEMYMSGKS 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,850,436
Number of Sequences: 5004
Number of extensions: 51709
Number of successful extensions: 160
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)