Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_E08
         (905 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              25   0.72 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   5.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   5.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.7  

>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 25.4 bits (53), Expect = 0.72
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 547 RLSCDCILREINILD 503
           +L C+CIL+  NILD
Sbjct: 60  QLYCECILKNFNILD 74


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 479 SRDVFNSDVQNIDFSKNTVAAKSIND 556
           S ++  +  QNID +KNT+     ND
Sbjct: 410 SMEINQNIAQNIDHAKNTIIDYRNND 435


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 129 WRSVNKTNDCLHVCGLRLSNV 67
           W++  + N  LH C +R+ NV
Sbjct: 548 WKNAVRHNLSLHKCFMRVENV 568


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 8/31 (25%), Positives = 21/31 (67%)
 Frame = +3

Query: 651 YFKGAWSSKFDERLTSDRDFYVSKDKTIKVP 743
           +F+ +++++  +RLTS  + +V   K +++P
Sbjct: 78  HFESSFNAQSWQRLTSLHELHVHGCKVLRIP 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,050
Number of Sequences: 438
Number of extensions: 4340
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)