Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_E07
(1093 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L41162-1|AAC41947.1| 684|Homo sapiens alpha-3 type IX collagen ... 36 0.26
BC011705-1|AAH11705.1| 684|Homo sapiens collagen, type IX, alph... 36 0.26
AL035669-11|CAI95767.2| 191|Homo sapiens collagen type IX alpha... 36 0.26
AL035669-10|CAC12750.1| 684|Homo sapiens collagen type IX alpha... 36 0.26
AF026802-1|AAD47357.1| 684|Homo sapiens alpha-3 type IX collage... 36 0.26
X15332-1|CAA33387.1| 1078|Homo sapiens alpha-1 (III) collagen pr... 33 1.8
X14420-1|CAA32583.1| 1466|Homo sapiens prepro-alpha-1 type 3 col... 33 1.8
BC028178-1|AAH28178.1| 1163|Homo sapiens COL3A1 protein protein. 33 1.8
AY016295-2|AAL13167.1| 1466|Homo sapiens type III preprocollagen... 33 1.8
AC066694-1|AAY24164.1| 1466|Homo sapiens unknown protein. 33 1.8
Y14690-1|CAA75002.1| 1496|Homo sapiens procollagen alpha 2(V) pr... 31 5.6
X04758-1|CAA28454.1| 1099|Homo sapiens protein ( Human mRNA for ... 31 5.6
X57527-1|CAA40748.1| 744|Homo sapiens alpha 1(VIII) collagen pr... 31 7.4
BT009917-1|AAP88919.1| 744|Homo sapiens collagen, type VIII, al... 31 7.4
BC086874-1|AAH86874.1| 1139|Homo sapiens COL5A2 protein protein. 31 7.4
BC064990-1|AAH64990.1| 1147|Homo sapiens splicing factor, argini... 31 7.4
BC052286-1|AAH52286.1| 1147|Homo sapiens splicing factor, argini... 31 7.4
BC043353-1|AAH43353.1| 1146|Homo sapiens splicing factor, argini... 31 7.4
BC014921-1|AAH14921.1| 1147|Homo sapiens splicing factor, argini... 31 7.4
BC013581-1|AAH13581.1| 744|Homo sapiens collagen, type VIII, al... 31 7.4
AY550974-1|AAT52220.1| 745|Homo sapiens cell proliferation-indu... 31 7.4
AY016295-1|AAL13166.1| 1347|Homo sapiens type V preprocollagen a... 31 7.4
AL117417-1|CAB55911.1| 667|Homo sapiens hypothetical protein pr... 31 7.4
AF023142-1|AAD09327.1| 1157|Homo sapiens pre-mRNA splicing SR pr... 31 7.4
AB209045-1|BAD92282.1| 1502|Homo sapiens alpha 2 type V collagen... 31 7.4
AB032998-1|BAA86486.1| 929|Homo sapiens KIAA1172 protein protein. 31 7.4
AF177941-1|AAF59902.1| 1745|Homo sapiens collagen type V alpha 3... 31 9.8
AB209175-1|BAD92412.1| 1658|Homo sapiens collagen, type V, alpha... 31 9.8
>L41162-1|AAC41947.1| 684|Homo sapiens alpha-3 type IX collagen
protein.
Length = 684
Score = 35.9 bits (79), Expect = 0.26
Identities = 18/47 (38%), Positives = 19/47 (40%)
Frame = -3
Query: 785 PPXWKGCXGXXXGAXSPPPXGWXGKXSPGPXPXSGXPGXAGGXRXXG 645
PP KG G P P G GK PGP +G G GG G
Sbjct: 93 PPGPKGAPGERGSLGPPGPPGLGGKGLPGPPGEAGVSGPPGGIGLRG 139
>BC011705-1|AAH11705.1| 684|Homo sapiens collagen, type IX, alpha 3
protein.
Length = 684
Score = 35.9 bits (79), Expect = 0.26
Identities = 18/47 (38%), Positives = 19/47 (40%)
Frame = -3
Query: 785 PPXWKGCXGXXXGAXSPPPXGWXGKXSPGPXPXSGXPGXAGGXRXXG 645
PP KG G P P G GK PGP +G G GG G
Sbjct: 93 PPGPKGAPGERGSLGPPGPPGLGGKGLPGPPGEAGVSGPPGGIGLRG 139
>AL035669-11|CAI95767.2| 191|Homo sapiens collagen type IX alpha 3
protein.
Length = 191
Score = 35.9 bits (79), Expect = 0.26
Identities = 18/47 (38%), Positives = 19/47 (40%)
Frame = -3
Query: 785 PPXWKGCXGXXXGAXSPPPXGWXGKXSPGPXPXSGXPGXAGGXRXXG 645
PP KG G P P G GK PGP +G G GG G
Sbjct: 56 PPGPKGAPGERGSLGPPGPPGLGGKGLPGPPGEAGVSGPPGGIGLRG 102
>AL035669-10|CAC12750.1| 684|Homo sapiens collagen type IX alpha 3
protein.
Length = 684
Score = 35.9 bits (79), Expect = 0.26
Identities = 18/47 (38%), Positives = 19/47 (40%)
Frame = -3
Query: 785 PPXWKGCXGXXXGAXSPPPXGWXGKXSPGPXPXSGXPGXAGGXRXXG 645
PP KG G P P G GK PGP +G G GG G
Sbjct: 93 PPGPKGAPGERGSLGPPGPPGLGGKGLPGPPGEAGVSGPPGGIGLRG 139
>AF026802-1|AAD47357.1| 684|Homo sapiens alpha-3 type IX collagen
protein.
Length = 684
Score = 35.9 bits (79), Expect = 0.26
Identities = 18/47 (38%), Positives = 19/47 (40%)
Frame = -3
Query: 785 PPXWKGCXGXXXGAXSPPPXGWXGKXSPGPXPXSGXPGXAGGXRXXG 645
PP KG G P P G GK PGP +G G GG G
Sbjct: 93 PPGPKGAPGERGSLGPPGPPGLGGKGLPGPPGEAGVSGPPGGIGLRG 139
>X15332-1|CAA33387.1| 1078|Homo sapiens alpha-1 (III) collagen
protein.
Length = 1078
Score = 33.1 bits (72), Expect = 1.8
Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = -3
Query: 785 PPXWKGCXGXXXGAXSPPPXGWXGKXS-PGPXPXSGXPGXAG 663
PP G G GA P P G G PGP +G PG G
Sbjct: 538 PPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQG 579
>X14420-1|CAA32583.1| 1466|Homo sapiens prepro-alpha-1 type 3
collagen protein.
Length = 1466
Score = 33.1 bits (72), Expect = 1.8
Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = -3
Query: 785 PPXWKGCXGXXXGAXSPPPXGWXGKXS-PGPXPXSGXPGXAG 663
PP G G GA P P G G PGP +G PG G
Sbjct: 685 PPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQG 726
Score = 31.9 bits (69), Expect = 4.2
Identities = 31/108 (28%), Positives = 35/108 (32%), Gaps = 1/108 (0%)
Frame = -3
Query: 965 GXPPPXGNXRXXXXXEXXGXXRXXGPXNXFPLRGXATAXGXAXXSPKGGSVCLXNXKXNX 786
G P P GN G GP G G + GG +
Sbjct: 579 GFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTGPGG-----DKGDTG 633
Query: 785 PPXWKGCXGXXXGAXSPPPXGWXGKXS-PGPXPXSGXPGXAGGXRXXG 645
PP +G G G PP G GK PGP +G PG GG G
Sbjct: 634 PPGPQGLQGLP-GTGGPP--GENGKPGEPGPKGDAGAPGAPGGKGDAG 678
>BC028178-1|AAH28178.1| 1163|Homo sapiens COL3A1 protein protein.
Length = 1163
Score = 33.1 bits (72), Expect = 1.8
Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = -3
Query: 785 PPXWKGCXGXXXGAXSPPPXGWXGKXS-PGPXPXSGXPGXAG 663
PP G G GA P P G G PGP +G PG G
Sbjct: 685 PPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQG 726
Score = 31.9 bits (69), Expect = 4.2
Identities = 31/108 (28%), Positives = 35/108 (32%), Gaps = 1/108 (0%)
Frame = -3
Query: 965 GXPPPXGNXRXXXXXEXXGXXRXXGPXNXFPLRGXATAXGXAXXSPKGGSVCLXNXKXNX 786
G P P GN G GP G G + GG +
Sbjct: 579 GFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTGPGG-----DKGDTG 633
Query: 785 PPXWKGCXGXXXGAXSPPPXGWXGKXS-PGPXPXSGXPGXAGGXRXXG 645
PP +G G G PP G GK PGP +G PG GG G
Sbjct: 634 PPGPQGLQGLP-GTGGPP--GENGKPGEPGPKGDAGAPGAPGGKGDAG 678
>AY016295-2|AAL13167.1| 1466|Homo sapiens type III preprocollagen
alpha 1 chain protein.
Length = 1466
Score = 33.1 bits (72), Expect = 1.8
Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = -3
Query: 785 PPXWKGCXGXXXGAXSPPPXGWXGKXS-PGPXPXSGXPGXAG 663
PP G G GA P P G G PGP +G PG G
Sbjct: 685 PPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQG 726
Score = 31.9 bits (69), Expect = 4.2
Identities = 31/108 (28%), Positives = 35/108 (32%), Gaps = 1/108 (0%)
Frame = -3
Query: 965 GXPPPXGNXRXXXXXEXXGXXRXXGPXNXFPLRGXATAXGXAXXSPKGGSVCLXNXKXNX 786
G P P GN G GP G G + GG +
Sbjct: 579 GFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTGPGG-----DKGDTG 633
Query: 785 PPXWKGCXGXXXGAXSPPPXGWXGKXS-PGPXPXSGXPGXAGGXRXXG 645
PP +G G G PP G GK PGP +G PG GG G
Sbjct: 634 PPGPQGLQGLP-GTGGPP--GENGKPGEPGPKGDAGAPGAPGGKGDAG 678
>AC066694-1|AAY24164.1| 1466|Homo sapiens unknown protein.
Length = 1466
Score = 33.1 bits (72), Expect = 1.8
Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = -3
Query: 785 PPXWKGCXGXXXGAXSPPPXGWXGKXS-PGPXPXSGXPGXAG 663
PP G G GA P P G G PGP +G PG G
Sbjct: 685 PPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQG 726
Score = 31.9 bits (69), Expect = 4.2
Identities = 31/108 (28%), Positives = 35/108 (32%), Gaps = 1/108 (0%)
Frame = -3
Query: 965 GXPPPXGNXRXXXXXEXXGXXRXXGPXNXFPLRGXATAXGXAXXSPKGGSVCLXNXKXNX 786
G P P GN G GP G G + GG +
Sbjct: 579 GFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTGPGG-----DKGDTG 633
Query: 785 PPXWKGCXGXXXGAXSPPPXGWXGKXS-PGPXPXSGXPGXAGGXRXXG 645
PP +G G G PP G GK PGP +G PG GG G
Sbjct: 634 PPGPQGLQGLP-GTGGPP--GENGKPGEPGPKGDAGAPGAPGGKGDAG 678
>Y14690-1|CAA75002.1| 1496|Homo sapiens procollagen alpha 2(V)
protein.
Length = 1496
Score = 31.5 bits (68), Expect = 5.6
Identities = 35/127 (27%), Positives = 39/127 (30%), Gaps = 3/127 (2%)
Frame = -3
Query: 1016 GVGRXAARTXGXXLXXGGXPPPXGNXRXXXXXEXXGXXRXXGPXNXFPLRGXATAXGXAX 837
G+G A GG P P G G G RG + G
Sbjct: 778 GIGEKGAEGTAGNDGAGGLPGPLGPPGPAGLLGEKGEPGPRGLVGPPGSRGNPGSRGE-- 835
Query: 836 XSPKGGSVCLXNXKXNXPPXWKGCXGXXX---GAXSPPPXGWXGKXSPGPXPXSGXPGXA 666
P G + P KG G A SP P G G SPGP +G PG
Sbjct: 836 NGPTGAVGFAGPQGSDGQPGVKGEPGEPGQKGDAGSPGPQGLAG--SPGPHGPNGVPGLK 893
Query: 665 GGXRXXG 645
GG G
Sbjct: 894 GGRGTQG 900
>X04758-1|CAA28454.1| 1099|Homo sapiens protein ( Human mRNA for
pro-alpha 2 (V) collagen chain. ).
Length = 1099
Score = 31.5 bits (68), Expect = 5.6
Identities = 35/127 (27%), Positives = 39/127 (30%), Gaps = 3/127 (2%)
Frame = -3
Query: 1016 GVGRXAARTXGXXLXXGGXPPPXGNXRXXXXXEXXGXXRXXGPXNXFPLRGXATAXGXAX 837
G+G A GG P P G G G RG + G
Sbjct: 381 GIGEKGAEGTAGNDGAGGLPGPLGPPGPAGLLGEKGEPGPRGLVGPPGSRGNPGSRGE-- 438
Query: 836 XSPKGGSVCLXNXKXNXPPXWKGCXGXXX---GAXSPPPXGWXGKXSPGPXPXSGXPGXA 666
P G + P KG G A SP P G G SPGP +G PG
Sbjct: 439 NGPTGAVGFAGPQGSDGQPGVKGEPGEPGQKGDAGSPGPQGLAG--SPGPHGPNGVPGLK 496
Query: 665 GGXRXXG 645
GG G
Sbjct: 497 GGRGTQG 503
>X57527-1|CAA40748.1| 744|Homo sapiens alpha 1(VIII) collagen
protein.
Length = 744
Score = 31.1 bits (67), Expect = 7.4
Identities = 14/40 (35%), Positives = 16/40 (40%)
Frame = +1
Query: 643 VPXXRXPPAXPGXPLXGXGPGXXFPXQPXGGGDXAPXNXP 762
+P + PP G P G G P QP GD P P
Sbjct: 192 IPGPQGPPGPHGLPGIGKPGGPGLPGQPGPKGDRGPKGLP 231
>BT009917-1|AAP88919.1| 744|Homo sapiens collagen, type VIII, alpha
1 protein.
Length = 744
Score = 31.1 bits (67), Expect = 7.4
Identities = 14/40 (35%), Positives = 16/40 (40%)
Frame = +1
Query: 643 VPXXRXPPAXPGXPLXGXGPGXXFPXQPXGGGDXAPXNXP 762
+P + PP G P G G P QP GD P P
Sbjct: 192 IPGPQGPPGPHGLPGIGKPGGPGLPGQPGPKGDRGPKGLP 231
>BC086874-1|AAH86874.1| 1139|Homo sapiens COL5A2 protein protein.
Length = 1139
Score = 31.1 bits (67), Expect = 7.4
Identities = 18/42 (42%), Positives = 19/42 (45%)
Frame = -3
Query: 770 GCXGXXXGAXSPPPXGWXGKXSPGPXPXSGXPGXAGGXRXXG 645
G G A SP P G G SPGP +G PG GG G
Sbjct: 504 GEPGQKGDAGSPGPQGLAG--SPGPHGPNGVPGLKGGRGTQG 543
>BC064990-1|AAH64990.1| 1147|Homo sapiens splicing factor,
arginine/serine-rich 15 protein.
Length = 1147
Score = 31.1 bits (67), Expect = 7.4
Identities = 21/65 (32%), Positives = 24/65 (36%), Gaps = 4/65 (6%)
Frame = +1
Query: 643 VPXXRXPPAXPGXPLXG-XGPGXXFP---XQPXGGGDXAPXNXPLXPFXKGGXXXFXFXK 810
VP + PP PG P+ G P P P G G P P PF + G
Sbjct: 677 VPPPQVPPHQPGPPVVGALQPPAFTPPLGIPPPGFGPGVPPPPPPPPFLRPGFNPMHLPP 736
Query: 811 QTLPP 825
LPP
Sbjct: 737 GFLPP 741
>BC052286-1|AAH52286.1| 1147|Homo sapiens splicing factor,
arginine/serine-rich 15 protein.
Length = 1147
Score = 31.1 bits (67), Expect = 7.4
Identities = 21/65 (32%), Positives = 24/65 (36%), Gaps = 4/65 (6%)
Frame = +1
Query: 643 VPXXRXPPAXPGXPLXG-XGPGXXFP---XQPXGGGDXAPXNXPLXPFXKGGXXXFXFXK 810
VP + PP PG P+ G P P P G G P P PF + G
Sbjct: 677 VPPPQVPPHQPGPPVVGALQPPAFTPPLGIPPPGFGPGVPPPPPPPPFLRPGFNPMHLPP 736
Query: 811 QTLPP 825
LPP
Sbjct: 737 GFLPP 741
>BC043353-1|AAH43353.1| 1146|Homo sapiens splicing factor,
arginine/serine-rich 15 protein.
Length = 1146
Score = 31.1 bits (67), Expect = 7.4
Identities = 21/65 (32%), Positives = 24/65 (36%), Gaps = 4/65 (6%)
Frame = +1
Query: 643 VPXXRXPPAXPGXPLXG-XGPGXXFP---XQPXGGGDXAPXNXPLXPFXKGGXXXFXFXK 810
VP + PP PG P+ G P P P G G P P PF + G
Sbjct: 677 VPPPQVPPHQPGPPVVGALQPPAFTPPLGIPPPGFGPGVPPPPPPPPFLRPGFNPMHLPP 736
Query: 811 QTLPP 825
LPP
Sbjct: 737 GFLPP 741
>BC014921-1|AAH14921.1| 1147|Homo sapiens splicing factor,
arginine/serine-rich 15 protein.
Length = 1147
Score = 31.1 bits (67), Expect = 7.4
Identities = 21/65 (32%), Positives = 24/65 (36%), Gaps = 4/65 (6%)
Frame = +1
Query: 643 VPXXRXPPAXPGXPLXG-XGPGXXFP---XQPXGGGDXAPXNXPLXPFXKGGXXXFXFXK 810
VP + PP PG P+ G P P P G G P P PF + G
Sbjct: 677 VPPPQVPPHQPGPPVVGALQPPAFTPPLGIPPPGFGPGVPPPPPPPPFLRPGFNPMHLPP 736
Query: 811 QTLPP 825
LPP
Sbjct: 737 GFLPP 741
>BC013581-1|AAH13581.1| 744|Homo sapiens collagen, type VIII, alpha
1 protein.
Length = 744
Score = 31.1 bits (67), Expect = 7.4
Identities = 14/40 (35%), Positives = 16/40 (40%)
Frame = +1
Query: 643 VPXXRXPPAXPGXPLXGXGPGXXFPXQPXGGGDXAPXNXP 762
+P + PP G P G G P QP GD P P
Sbjct: 192 IPGPQGPPGPHGLPGIGKPGGPGLPGQPGPKGDRGPKGLP 231
>AY550974-1|AAT52220.1| 745|Homo sapiens cell
proliferation-inducing protein 41 protein.
Length = 745
Score = 31.1 bits (67), Expect = 7.4
Identities = 14/40 (35%), Positives = 16/40 (40%)
Frame = +1
Query: 643 VPXXRXPPAXPGXPLXGXGPGXXFPXQPXGGGDXAPXNXP 762
+P + PP G P G G P QP GD P P
Sbjct: 193 IPGPQGPPGPHGLPGIGKPGGPGLPGQPGPKGDRGPKGLP 232
>AY016295-1|AAL13166.1| 1347|Homo sapiens type V preprocollagen
alpha 2 chain protein.
Length = 1347
Score = 31.1 bits (67), Expect = 7.4
Identities = 18/42 (42%), Positives = 19/42 (45%)
Frame = -3
Query: 770 GCXGXXXGAXSPPPXGWXGKXSPGPXPXSGXPGXAGGXRXXG 645
G G A SP P G G SPGP +G PG GG G
Sbjct: 712 GEPGQKGDAGSPGPQGLAG--SPGPHGPNGVPGLKGGRGTQG 751
>AL117417-1|CAB55911.1| 667|Homo sapiens hypothetical protein
protein.
Length = 667
Score = 31.1 bits (67), Expect = 7.4
Identities = 21/65 (32%), Positives = 24/65 (36%), Gaps = 4/65 (6%)
Frame = +1
Query: 643 VPXXRXPPAXPGXPLXG-XGPGXXFP---XQPXGGGDXAPXNXPLXPFXKGGXXXFXFXK 810
VP + PP PG P+ G P P P G G P P PF + G
Sbjct: 488 VPPPQVPPHQPGPPVVGALQPPAFTPPLGIPPPGFGPGVPPPPPPPPFLRPGFNPMHLPP 547
Query: 811 QTLPP 825
LPP
Sbjct: 548 GFLPP 552
>AF023142-1|AAD09327.1| 1157|Homo sapiens pre-mRNA splicing SR
protein rA4 protein.
Length = 1157
Score = 31.1 bits (67), Expect = 7.4
Identities = 21/65 (32%), Positives = 24/65 (36%), Gaps = 4/65 (6%)
Frame = +1
Query: 643 VPXXRXPPAXPGXPLXG-XGPGXXFP---XQPXGGGDXAPXNXPLXPFXKGGXXXFXFXK 810
VP + PP PG P+ G P P P G G P P PF + G
Sbjct: 687 VPPPQVPPHQPGPPVVGALQPPAFTPPLGIPPPGFGPGVPPPPPPPPFLRPGFNPMHLPP 746
Query: 811 QTLPP 825
LPP
Sbjct: 747 GFLPP 751
>AB209045-1|BAD92282.1| 1502|Homo sapiens alpha 2 type V collagen
preproprotein variant protein.
Length = 1502
Score = 31.1 bits (67), Expect = 7.4
Identities = 18/42 (42%), Positives = 19/42 (45%)
Frame = -3
Query: 770 GCXGXXXGAXSPPPXGWXGKXSPGPXPXSGXPGXAGGXRXXG 645
G G A SP P G G SPGP +G PG GG G
Sbjct: 867 GEPGQKGDAGSPGPQGLAG--SPGPHGPNGVPGLKGGRGTQG 906
>AB032998-1|BAA86486.1| 929|Homo sapiens KIAA1172 protein protein.
Length = 929
Score = 31.1 bits (67), Expect = 7.4
Identities = 21/65 (32%), Positives = 24/65 (36%), Gaps = 4/65 (6%)
Frame = +1
Query: 643 VPXXRXPPAXPGXPLXG-XGPGXXFP---XQPXGGGDXAPXNXPLXPFXKGGXXXFXFXK 810
VP + PP PG P+ G P P P G G P P PF + G
Sbjct: 481 VPPPQVPPHQPGPPVVGALQPPAFTPPLGIPPPGFGPGVPPPPPPPPFLRPGFNPMHLPP 540
Query: 811 QTLPP 825
LPP
Sbjct: 541 GFLPP 545
>AF177941-1|AAF59902.1| 1745|Homo sapiens collagen type V alpha 3
chain protein.
Length = 1745
Score = 30.7 bits (66), Expect = 9.8
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = -3
Query: 785 PPXWKGCXGXXXGAXSPPPXGWXG-KXSPGPXPXSGXPGXAG 663
P +G G G P P G G K PGP +G PG G
Sbjct: 972 PAGLRGFPGPKGGPGDPGPTGLKGDKGPPGPVGANGSPGERG 1013
>AB209175-1|BAD92412.1| 1658|Homo sapiens collagen, type V, alpha 3
preproprotein variant protein.
Length = 1658
Score = 30.7 bits (66), Expect = 9.8
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = -3
Query: 785 PPXWKGCXGXXXGAXSPPPXGWXG-KXSPGPXPXSGXPGXAG 663
P +G G G P P G G K PGP +G PG G
Sbjct: 885 PAGLRGFPGPKGGPGDPGPTGLKGDKGPPGPVGANGSPGERG 926
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,484,948
Number of Sequences: 237096
Number of extensions: 1958989
Number of successful extensions: 5106
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 2783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4954
length of database: 76,859,062
effective HSP length: 91
effective length of database: 55,283,326
effective search space used: 15037064672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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