Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_E07
         (1093 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70756-4|CAA94788.1|  290|Caenorhabditis elegans Hypothetical pr...    31   1.9  
AF045646-2|AAK29827.1|  371|Caenorhabditis elegans Collagen prot...    31   1.9  
Z70208-1|CAA94141.1|  339|Caenorhabditis elegans Hypothetical pr...    30   2.5  
M80650-1|AAA27985.1|  298|Caenorhabditis elegans alpha-collagen ...    30   2.5  
AF000198-8|AAP68908.1|  435|Caenorhabditis elegans Collagen prot...    30   2.5  
Z67738-4|CAJ43444.1|  279|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z67738-3|CAA91544.2|  332|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U50191-3|AAK31557.1|  380|Caenorhabditis elegans Dumpy : shorter...    29   4.4  
L12706-1|AAA17398.2|  360|Caenorhabditis elegans collagen protein.     29   4.4  
Z95559-1|CAB08999.1|  289|Caenorhabditis elegans Hypothetical pr...    29   5.8  
Z79694-6|CAB01958.1|  316|Caenorhabditis elegans Hypothetical pr...    29   7.7  
Z79694-5|CAB01961.1|  316|Caenorhabditis elegans Hypothetical pr...    29   7.7  
U53333-6|AAA96159.2|  304|Caenorhabditis elegans Collagen protei...    29   7.7  

>Z70756-4|CAA94788.1|  290|Caenorhabditis elegans Hypothetical
           protein T06E4.4 protein.
          Length = 290

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 29/109 (26%), Positives = 32/109 (29%), Gaps = 1/109 (0%)
 Frame = -3

Query: 965 GXPPPXGNXRXXXXXEXXGXXRXXGPXNXFPLRGXATAXGXAXXSPKGGSVCLXNXKXNX 786
           G P P G           G     GP       G A A G A      G+      +   
Sbjct: 143 GAPGPQGPSGAPGQDAVGGGPGPAGPQGP---AGDAGAPGQAGAPGHPGAPGQGGQRSRG 199

Query: 785 PPXWKGCXGXXXGAXSPPPXGWXG-KXSPGPXPXSGXPGXAGGXRXXGT 642
            P   G  G    A  P   G  G   +PGP    G PG  G     GT
Sbjct: 200 TPGPSGAPGPQGPAGGPGQPGQSGGAGAPGPAGAPGAPGGPGNAGTPGT 248


>AF045646-2|AAK29827.1|  371|Caenorhabditis elegans Collagen protein
           103 protein.
          Length = 371

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 17/49 (34%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
 Frame = -3

Query: 785 PPXWKGCXGXXXGAXSPPPXGWXGK-XSPGPXPXSGXPGXAGGXRXXGT 642
           PP   G  G   G   P P G  G+  +PG     G PG  G     GT
Sbjct: 266 PPGNNGAPGGGYGVGPPGPPGPSGRPGAPGQPGPDGQPGAPGNDGTPGT 314


>Z70208-1|CAA94141.1|  339|Caenorhabditis elegans Hypothetical
           protein F54B11.1 protein.
          Length = 339

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 30/100 (30%), Positives = 32/100 (32%), Gaps = 6/100 (6%)
 Frame = -3

Query: 893 GPXNXFPLRGXATAXGXAXXSPKGGSVCLXNXKXNXPPXWKGCXGXXX--GAXSPPPXGW 720
           GP       G A   G    S  GG V         PP   G  G     GA    P G 
Sbjct: 227 GPPGQPGNHGLAGQPGSPGQSVLGGIVGFAAPGPMGPPGLMGPPGLDAQNGANGFGPPGL 286

Query: 719 XGKXSPGPXPXS----GXPGXAGGXRXXGTRXXXXKXSXM 612
            G   P   P S    G PG +GG R  G +    K   M
Sbjct: 287 PGPPGPPGRPGSDGNPGVPGQSGGSRRHGEKGVCPKYCAM 326


>M80650-1|AAA27985.1|  298|Caenorhabditis elegans alpha-collagen
           protein.
          Length = 298

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
 Frame = -3

Query: 785 PPXWKGCXGXXXGAXSPP-PXGWXGK-XSPGPXPXSGXPGXAG 663
           PP WK C     G   PP P G  G+  SPG       PG  G
Sbjct: 142 PPPWKPCPQGPPGPPGPPGPPGDSGEPGSPGLPGQDAAPGEPG 184


>AF000198-8|AAP68908.1|  435|Caenorhabditis elegans Collagen protein
           51 protein.
          Length = 435

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 17/41 (41%), Positives = 17/41 (41%)
 Frame = -3

Query: 785 PPXWKGCXGXXXGAXSPPPXGWXGKXSPGPXPXSGXPGXAG 663
           P    G  G    A SPPP G  G   PGP    G PG  G
Sbjct: 194 PAGAPGVPGPDGDAGSPPPPGPPG--PPGPPGNDGQPGAPG 232


>Z67738-4|CAJ43444.1|  279|Caenorhabditis elegans Hypothetical
           protein W03G11.1b protein.
          Length = 279

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 18/45 (40%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
 Frame = -3

Query: 785 PPXWKGCXGXXXGAXSPPPXGWXGKX----SPGPXPXSGXPGXAG 663
           PP   G  G   GA  P   G  G+     SPGP   SG PG  G
Sbjct: 142 PPGRPGPDGENGGAGEPGRDGLAGRPGARGSPGPRGPSGNPGADG 186


>Z67738-3|CAA91544.2|  332|Caenorhabditis elegans Hypothetical
           protein W03G11.1a protein.
          Length = 332

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 18/45 (40%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
 Frame = -3

Query: 785 PPXWKGCXGXXXGAXSPPPXGWXGKX----SPGPXPXSGXPGXAG 663
           PP   G  G   GA  P   G  G+     SPGP   SG PG  G
Sbjct: 195 PPGRPGPDGENGGAGEPGRDGLAGRPGARGSPGPRGPSGNPGADG 239


>U50191-3|AAK31557.1|  380|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 2 protein.
          Length = 380

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 17/49 (34%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
 Frame = -3

Query: 785 PPXWKGCXGXXXGAXSPPPXGWXG-KXSPGPXPXSGXPGXAGGXRXXGT 642
           PP   G  G    A +P   GW G   +PGP    G  G  G     GT
Sbjct: 251 PPGSAGMPGEDGYAGTPGEKGWPGPPGAPGPGGMPGPNGPTGEQGPSGT 299


>L12706-1|AAA17398.2|  360|Caenorhabditis elegans collagen protein.
          Length = 360

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 17/49 (34%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
 Frame = -3

Query: 785 PPXWKGCXGXXXGAXSPPPXGWXG-KXSPGPXPXSGXPGXAGGXRXXGT 642
           PP   G  G    A +P   GW G   +PGP    G  G  G     GT
Sbjct: 251 PPGSAGMPGEDGYAGTPGEKGWPGPPGAPGPGGMPGPNGPTGEQGPSGT 299


>Z95559-1|CAB08999.1|  289|Caenorhabditis elegans Hypothetical
           protein Y41E3.2 protein.
          Length = 289

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 16/43 (37%), Positives = 18/43 (41%)
 Frame = -3

Query: 791 NXPPXWKGCXGXXXGAXSPPPXGWXGKXSPGPXPXSGXPGXAG 663
           N PP  +G  G       P P G  G   PGP   +G PG  G
Sbjct: 155 NGPPGEQGPKGPDAAPGEPGPKGPIG--PPGPPGQAGAPGEPG 195


>Z79694-6|CAB01958.1|  316|Caenorhabditis elegans Hypothetical
           protein C15A11.6 protein.
          Length = 316

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = +1

Query: 646 PXXRXPPAXPGXPLXGXGPGXXFPXQPXG 732
           P  + PP  PG P  G  PG   P  P G
Sbjct: 212 PGSQGPPGAPGQPGSGNAPGPAGPPGPAG 240


>Z79694-5|CAB01961.1|  316|Caenorhabditis elegans Hypothetical
           protein C15A11.5 protein.
          Length = 316

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = +1

Query: 646 PXXRXPPAXPGXPLXGXGPGXXFPXQPXG 732
           P  + PP  PG P  G  PG   P  P G
Sbjct: 212 PGPQGPPGAPGQPGSGNAPGPAGPPGPAG 240


>U53333-6|AAA96159.2|  304|Caenorhabditis elegans Collagen protein
           33 protein.
          Length = 304

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 14/41 (34%), Positives = 16/41 (39%)
 Frame = +1

Query: 661 PPAXPGXPLXGXGPGXXFPXQPXGGGDXAPXNXPLXPFXKG 783
           PP  PG P     PG   P +P   G+  P   P  P   G
Sbjct: 196 PPGSPGAPGEPGRPGDDAPSEPLIPGEPGPQGPPGPPGQAG 236


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,625,383
Number of Sequences: 27780
Number of extensions: 242958
Number of successful extensions: 936
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2939888878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)