Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_E06
         (912 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.23 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.30 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.6  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.7  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 19/51 (37%), Positives = 19/51 (37%)
 Frame = -3

Query: 736 GGGGGGXXXXXGPPGRFXGXPXRXGAXFFXXVFRXXPRGXGEXPPXXAGXG 584
           GG GGG     G PG F G P   G       F   P G G  P    G G
Sbjct: 224 GGFGGGPGGFEGGPGGFGGGPGGFGGGL--GGFGGGPGGFGGGPGGHGGPG 272


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = -3

Query: 607 PPXXAGXGXPPPPPXXP 557
           PP  AG G PPPPP  P
Sbjct: 767 PPGVAGAGPPPPPPPPP 783



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = +3

Query: 693 PGGPXFXXXPPPPPPPX*KXXXXXXLGGAXXPPP 794
           P  P     PPPPPPP         + GA  PPP
Sbjct: 753 PPAPIMGGPPPPPPPP--------GVAGAGPPPP 778



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +3

Query: 660 APXRXGXPXKRPGGPXFXXXPPPPPPP 740
           AP   G P   P        PPPPPPP
Sbjct: 755 APIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +2

Query: 761 PXPGGGXXPPPPKXIXXXPPFXPPXXP 841
           P  GG   PPPP  +    P  PP  P
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 26.2 bits (55), Expect(2) = 1.2
 Identities = 13/33 (39%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
 Frame = +1

Query: 532 PPPXPXNPEGPXXGGGXXXXPPXG--GGXPRXP 624
           P P P  P  P  GG     PP G  G  P  P
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +3

Query: 681 PXKRPGGPXFXXXPPPPPPP 740
           P   PG       PPPPPPP
Sbjct: 764 PPPPPGVAGAGPPPPPPPPP 783



 Score = 20.6 bits (41), Expect(2) = 1.2
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +1

Query: 721 PPXPPPP 741
           PP PPPP
Sbjct: 777 PPPPPPP 783


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/24 (50%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
 Frame = +3

Query: 675 GXPXKRPGGPXFXXX--PPPPPPP 740
           G P   P  P F     PPPPPPP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPPP 30



 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +2

Query: 776 GXXPPPPKXIXXXPPFXPPXXP 841
           G  PPPP      PP  PP  P
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPP 28



 Score = 23.4 bits (48), Expect(2) = 2.6
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 457 PPPXPGXXKKKK 422
           PPP PG  KK+K
Sbjct: 26  PPPPPGYVKKRK 37



 Score = 22.2 bits (45), Expect(2) = 2.6
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 586 GXPPPPPXXP 557
           G PPPPP  P
Sbjct: 7   GNPPPPPPPP 16


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 19/76 (25%), Positives = 20/76 (26%), Gaps = 5/76 (6%)
 Frame = +3

Query: 525 PXPPPXXXXPXGXXGGGGGXPXPAXXG-----GXSPXPRGXXRKTXXKXXAPXRXGXPXK 689
           P PPP               P P         G  P   G    +      P R      
Sbjct: 291 PLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGS 350

Query: 690 RPGGPXFXXXPPPPPP 737
            P  P     PPPPPP
Sbjct: 351 IPLPPQGRSAPPPPPP 366


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,126,874
Number of Sequences: 5004
Number of extensions: 32036
Number of successful extensions: 196
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)