Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_E04
         (884 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy...    27   2.7  
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa...    27   2.7  
SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   4.7  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    26   8.2  

>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 581

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +1

Query: 244 DGVLWIRAPIWE-TILRHLR*ILLSNEHEFGSRRLCRNYKQCEIRRLRHVDVRCR 405
           +GV W R    + + L +L+ +LLS E    ++  C    QC ++R+ H  V CR
Sbjct: 492 NGVEWQRLRSGDYSNLPNLKDLLLSKEKVQINKVRCAESLQCLLQRMTHPYVDCR 546


>SPAC1B9.02c |sck1||serine/threonine protein kinase
           Sck1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 696

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -3

Query: 606 GSNSWAGSGVG-LGVLPKNSRLFQARNPINAIITMHTIVIP 487
           GSNS   +G+  +G   +  +L Q+R P ++    H  V+P
Sbjct: 89  GSNSSESNGITPMGTYSEKPKLLQSRTPPSSCYIRHDTVVP 129


>SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -1

Query: 761 FRLDLFLLHYLDARLHIRETTTLTVKNL 678
           FR+ LFL H   A LH   T TL++ NL
Sbjct: 144 FRIVLFLSHASPAILHTIFTFTLSIPNL 171


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 271 WVHESTIRHRHIRLAFYVNIFIFSRKYCLDTV 176
           WVH   I H H +    V +F+FS+K C + V
Sbjct: 538 WVH--LIGHLHKQNLLPVIVFVFSKKRCEEYV 567


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,384,757
Number of Sequences: 5004
Number of extensions: 69577
Number of successful extensions: 188
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)