Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_E04
         (884 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   1.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   4.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   4.9  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   6.5  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   6.5  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   6.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.5  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   8.6  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +2

Query: 296  LGRFYFPTNMSLDRGDCAVTINNVKYDD 379
            L  F F T   LD  D  + INNV Y+D
Sbjct: 1413 LSDFGFSTEDILDTADEDLLINNVFYED 1440


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 460 NSFYFYIYSISVFVSIVESCTARPRAVIVVFHIV 359
           N F   +Y  ++ V  V SCT+   + IV+F +V
Sbjct: 305 NKFNNNVYKDALIVCTVNSCTSM-LSGIVIFSVV 337


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 460 NSFYFYIYSISVFVSIVESCTARPRAVIVVFHIV 359
           N F   +Y  ++ V  V SCT+   + IV+F +V
Sbjct: 358 NKFNNNVYKDALIVCTVNSCTSM-LSGIVIFSVV 390


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +2

Query: 35  ESLKDFDSLISCLKMSKPICI 97
           +S+K  D+ I  L+ +KP+C+
Sbjct: 392 KSIKSGDAAIVMLQPTKPMCV 412


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +2

Query: 86  PICIVLLSF-FILFNFPASIQGYRHFIDLETDGVETIFATENENVNIECK 232
           P+ +++ S+ FI+    A  +  R     +   V ++ ++EN+N + ECK
Sbjct: 228 PLFLIIYSYWFIIQAVAAHEKNMRE--QAKKMNVASLRSSENQNTSAECK 275


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +2

Query: 86  PICIVLLSF-FILFNFPASIQGYRHFIDLETDGVETIFATENENVNIECK 232
           P+ +++ S+ FI+    A  +  R     +   V ++ ++EN+N + ECK
Sbjct: 104 PLFLIIYSYWFIIQAVAAHEKNMRE--QAKKMNVASLRSSENQNTSAECK 151


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = -3

Query: 141  IDAGKLNNIKKLSSTIQIGLLIFKQEI---NESKSL 43
            +DAGKL +I+ +S  I  G      +I   +E KSL
Sbjct: 1803 LDAGKLKHIRAVSDFIYHGTSSTSSDISPMSEQKSL 1838


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = -3

Query: 141  IDAGKLNNIKKLSSTIQIGLLIFKQEI---NESKSL 43
            +DAGKL +I+ +S  I  G      +I   +E KSL
Sbjct: 1799 LDAGKLKHIRAVSDFIYHGTSSTSSDISPMSEQKSL 1834


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +2

Query: 326 SLDRGDCAVTINNVKYDDYGTWTCGAGLDDG 418
           +L++G C   I  V  D       GAG +DG
Sbjct: 452 NLEKGRCTGKIVTVGSDGNANIEIGAGEEDG 482


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,830
Number of Sequences: 438
Number of extensions: 5097
Number of successful extensions: 22
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)