Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_E01
         (887 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK001908-1|BAA91973.1|  684|Homo sapiens protein ( Homo sapiens ...   142   1e-33
BC020955-1|AAH20955.1|  547|Homo sapiens TBC1D23 protein protein.      59   2e-08
AK001750-1|BAA91881.1|  532|Homo sapiens protein ( Homo sapiens ...    59   2e-08
DQ020163-1|AAY84826.1|  250|Homo sapiens ER membrane protein ove...    31   5.6  
BC000854-1|AAH00854.1|  250|Homo sapiens transmembrane protein 1...    31   5.6  

>AK001908-1|BAA91973.1|  684|Homo sapiens protein ( Homo sapiens
           cDNA FLJ11046 fis, clone PLACE1004473. ).
          Length = 684

 Score =  142 bits (345), Expect = 1e-33
 Identities = 63/153 (41%), Positives = 92/153 (60%)
 Frame = +3

Query: 291 KKIPVSLRPDVWLLCLNCQDAGNQLLLFDEIFDLPNQNELRDDVKKFVEKLGNEEDDKLA 470
           + +P  LR  VW + LN    G+ L  +D I DLP QN +  D  +F+++L   E+    
Sbjct: 43  RPLPADLRAKVWKIALNVAGKGDCLASWDGILDLPEQNTIHKDCLQFIDQLSVPEEKAAE 102

Query: 471 VISDVESIITFYCKSKNTTYTSNNGWIDIXXXXXXXXXXRSDTYNLFERILKLYTPKGCS 650
           ++ D+ES+ITFYCKS+N  Y+++  WI +          RSD YN F  I+  Y P+ CS
Sbjct: 103 LLLDIESVITFYCKSRNIKYSTSLSWIHLLKPLVHLQLPRSDLYNCFYAIMNKYIPRDCS 162

Query: 651 KNGVPCHILRLILQYHDPELCSFLDTKRTLQNS 749
           + G P H  RL++QYH+PELCS+LDTK+   +S
Sbjct: 163 QKGRPFHPFRLLIQYHEPELCSYLDTKKITPDS 195



 Score = 35.5 bits (78), Expect = 0.26
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +2

Query: 728 KKNTPEQYCSXXLKSLFAGXCSLDVXLYMWDLFFKGXXXXHIFXCLIXII 877
           KK TP+ Y    L SLFA  CS +V   +WD + +      I+  ++ I+
Sbjct: 189 KKITPDSYALNWLGSLFACYCSTEVTQAIWDGYLQQADPFFIYFLMLIIL 238


>BC020955-1|AAH20955.1|  547|Homo sapiens TBC1D23 protein protein.
          Length = 547

 Score = 59.3 bits (137), Expect = 2e-08
 Identities = 22/40 (55%), Positives = 31/40 (77%)
 Frame = +3

Query: 630 YTPKGCSKNGVPCHILRLILQYHDPELCSFLDTKRTLQNS 749
           Y P+ CS+ G P H+ RL++QYH+PELCS+LDTK+   +S
Sbjct: 4   YIPRDCSQKGRPFHLFRLLIQYHEPELCSYLDTKKITPDS 43



 Score = 35.5 bits (78), Expect = 0.26
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +2

Query: 728 KKNTPEQYCSXXLKSLFAGXCSLDVXLYMWDLFFKGXXXXHIFXCLIXII 877
           KK TP+ Y    L SLFA  CS +V   +WD + +      I+  ++ I+
Sbjct: 37  KKITPDSYALNWLGSLFACYCSTEVTQAIWDGYLQQADPFFIYFLMLIIL 86


>AK001750-1|BAA91881.1|  532|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10888 fis, clone NT2RP4002052. ).
          Length = 532

 Score = 59.3 bits (137), Expect = 2e-08
 Identities = 22/40 (55%), Positives = 31/40 (77%)
 Frame = +3

Query: 630 YTPKGCSKNGVPCHILRLILQYHDPELCSFLDTKRTLQNS 749
           Y P+ CS+ G P H+ RL++QYH+PELCS+LDTK+   +S
Sbjct: 4   YIPRDCSQKGRPFHLFRLLIQYHEPELCSYLDTKKITPDS 43



 Score = 35.5 bits (78), Expect = 0.26
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +2

Query: 728 KKNTPEQYCSXXLKSLFAGXCSLDVXLYMWDLFFKGXXXXHIFXCLIXII 877
           KK TP+ Y    L SLFA  CS +V   +WD + +      I+  ++ I+
Sbjct: 37  KKITPDSYALNWLGSLFACYCSTEVTQAIWDGYLQQADPFFIYFLMLIIL 86


>DQ020163-1|AAY84826.1|  250|Homo sapiens ER membrane protein
           overexpressed in cancer protein.
          Length = 250

 Score = 31.1 bits (67), Expect = 5.6
 Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
 Frame = -3

Query: 738 VFFLYPKMNKVLDHGIEVSTLIYGKVLHFLNSPLVYTILKSFQ-TNYKYLTVVASNLTKV 562
           VFFL+P    V D GI+V  + + K     +S ++ TI+ + +  N  + TV  ++L+  
Sbjct: 103 VFFLFPHSVLVDDDGIKVVKVTFNK----QDSLVILTIMATLKIRNSNFYTVAVTSLSSQ 158

Query: 561 IKYQS 547
           I+Y +
Sbjct: 159 IQYMN 163


>BC000854-1|AAH00854.1|  250|Homo sapiens transmembrane protein 106C
           protein.
          Length = 250

 Score = 31.1 bits (67), Expect = 5.6
 Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
 Frame = -3

Query: 738 VFFLYPKMNKVLDHGIEVSTLIYGKVLHFLNSPLVYTILKSFQ-TNYKYLTVVASNLTKV 562
           VFFL+P    V D GI+V  + + K     +S ++ TI+ + +  N  + TV  ++L+  
Sbjct: 103 VFFLFPHSVLVDDDGIKVVKVTFNK----QDSLVILTIMATLKIRNSNFYTVAVTSLSSQ 158

Query: 561 IKYQS 547
           I+Y +
Sbjct: 159 IQYMN 163


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,781,727
Number of Sequences: 237096
Number of extensions: 2181660
Number of successful extensions: 7562
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7562
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11381686510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)