Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_E01
         (887 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78542-2|CAB01744.2|  641|Caenorhabditis elegans Hypothetical pr...    74   2e-13
AL032630-10|CAA21566.1|  396|Caenorhabditis elegans Hypothetical...    31   0.83 
AL132876-37|CAN99761.1| 1156|Caenorhabditis elegans Hypothetical...    29   4.4  
AL132876-36|CAD21670.3| 1138|Caenorhabditis elegans Hypothetical...    29   4.4  
U20861-8|AAA62297.3|  372|Caenorhabditis elegans Hypothetical pr...    29   5.9  
AF016671-6|AAK73904.1|  979|Caenorhabditis elegans Adaptin or ad...    29   5.9  
AF016671-5|AAB66112.2| 1251|Caenorhabditis elegans Adaptin or ad...    29   5.9  

>Z78542-2|CAB01744.2|  641|Caenorhabditis elegans Hypothetical
           protein F20D1.2 protein.
          Length = 641

 Score = 73.7 bits (173), Expect = 2e-13
 Identities = 38/135 (28%), Positives = 65/135 (48%)
 Frame = +3

Query: 324 WLLCLNCQDAGNQLLLFDEIFDLPNQNELRDDVKKFVEKLGNEEDDKLAVISDVESIITF 503
           W+  L      N L  +D++++L NQ  LR+D +K    L N+       + ++ES +T 
Sbjct: 43  WMRLLGVSMKPNPLDDWDQLYNLNNQCALRNDCRKLANGLKNKRS-----VPELESFLTL 97

Query: 504 YCKSKNTTYTSNNGWIDIXXXXXXXXXXRSDTYNLFERILKLYTPKGCSKNGVPCHILRL 683
           YCK +   Y  + GW+ I           +  +N+F      Y PK    +     + RL
Sbjct: 98  YCKKRGMDYIKDIGWLTILEKILLLNVPAAHEFNVFFAFTTKYIPKDTRPDAQIFDLFRL 157

Query: 684 ILQYHDPELCSFLDT 728
           +LQYHDP++ + L++
Sbjct: 158 LLQYHDPQISNHLES 172


>AL032630-10|CAA21566.1|  396|Caenorhabditis elegans Hypothetical
           protein Y62H9A.10 protein.
          Length = 396

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = -3

Query: 723 PKMNKVLDHGIEVSTLIY---GKVLHFLNSPLVYTILKSFQTNYKYLTVV 583
           P +N V +  + V T IY   G +  FLN PL   +LK+   N K L V+
Sbjct: 8   PPLNYVRNEDLFVITYIYVVFGAITLFLNIPLAIYLLKTTSKNQKELIVI 57


>AL132876-37|CAN99761.1| 1156|Caenorhabditis elegans Hypothetical
           protein Y105E8A.23b protein.
          Length = 1156

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 19/76 (25%), Positives = 33/76 (43%)
 Frame = +3

Query: 327 LLCLNCQDAGNQLLLFDEIFDLPNQNELRDDVKKFVEKLGNEEDDKLAVISDVESIITFY 506
           LL  N + +  QL +F    DL +  +  D ++KF   LG    +K+  + D+E +    
Sbjct: 196 LLAQNVRISDQQLEVFIGTEDLKSIQKEVDQIRKFYIPLGRNLLEKMRYLEDLELVAPLQ 255

Query: 507 CKSKNTTYTSNNGWID 554
               +  Y  N   +D
Sbjct: 256 GNCSSEEYRMNPFQVD 271


>AL132876-36|CAD21670.3| 1138|Caenorhabditis elegans Hypothetical
           protein Y105E8A.23a protein.
          Length = 1138

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 19/76 (25%), Positives = 33/76 (43%)
 Frame = +3

Query: 327 LLCLNCQDAGNQLLLFDEIFDLPNQNELRDDVKKFVEKLGNEEDDKLAVISDVESIITFY 506
           LL  N + +  QL +F    DL +  +  D ++KF   LG    +K+  + D+E +    
Sbjct: 196 LLAQNVRISDQQLEVFIGTEDLKSIQKEVDQIRKFYIPLGRNLLEKMRYLEDLELVAPLQ 255

Query: 507 CKSKNTTYTSNNGWID 554
               +  Y  N   +D
Sbjct: 256 GNCSSEEYRMNPFQVD 271


>U20861-8|AAA62297.3|  372|Caenorhabditis elegans Hypothetical
           protein C28H8.9a protein.
          Length = 372

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -3

Query: 576 NLTKVIKYQSNHCLKCKLCSSIC 508
           N+TK+IK     CL+CK C +IC
Sbjct: 296 NVTKIIKRSGWQCLECKSC-TIC 317


>AF016671-6|AAK73904.1|  979|Caenorhabditis elegans Adaptin or
           adaptin-related proteinprotein 5, isoform b protein.
          Length = 979

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 19/82 (23%), Positives = 36/82 (43%)
 Frame = +3

Query: 303 VSLRPDVWLLCLNCQDAGNQLLLFDEIFDLPNQNELRDDVKKFVEKLGNEEDDKLAVISD 482
           V    D+ L CL+ +D   ++   D ++ + ++  + + VKK +E +   E        +
Sbjct: 65  VQAHKDIVLRCLDDKDESIRIRSLDLLYGMVSKKNIVEIVKKLMEHVEAAEGSHYR--DE 122

Query: 483 VESIITFYCKSKNTTYTSNNGW 548
           + S I   C   N  Y +N  W
Sbjct: 123 LLSRIIGICSWSNYQYITNFEW 144


>AF016671-5|AAB66112.2| 1251|Caenorhabditis elegans Adaptin or
           adaptin-related proteinprotein 5, isoform a protein.
          Length = 1251

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 19/82 (23%), Positives = 36/82 (43%)
 Frame = +3

Query: 303 VSLRPDVWLLCLNCQDAGNQLLLFDEIFDLPNQNELRDDVKKFVEKLGNEEDDKLAVISD 482
           V    D+ L CL+ +D   ++   D ++ + ++  + + VKK +E +   E        +
Sbjct: 337 VQAHKDIVLRCLDDKDESIRIRSLDLLYGMVSKKNIVEIVKKLMEHVEAAEGSHYR--DE 394

Query: 483 VESIITFYCKSKNTTYTSNNGW 548
           + S I   C   N  Y +N  W
Sbjct: 395 LLSRIIGICSWSNYQYITNFEW 416


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,104,183
Number of Sequences: 27780
Number of extensions: 375778
Number of successful extensions: 955
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)