Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_D24
         (907 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|c...   143   4e-35
SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces pombe...    84   3e-17
SPCC1494.08c |||conserved fungal protein|Schizosaccharomyces pom...    31   0.30 
SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyce...    28   1.6  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    27   4.8  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    26   6.4  
SPBC14C8.02 |tim44||TIM23 translocase complex subunit Tim44|Schi...    26   6.4  
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces...    26   8.5  

>SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 291

 Score =  143 bits (346), Expect = 4e-35
 Identities = 66/158 (41%), Positives = 99/158 (62%)
 Frame = +3

Query: 126 DTCLSNCEKNFIQKIVSQGHRLDGRNFNETRKLDISFGSEYGCCIVSLGETKILSEVTCE 305
           +T L+N  K F+   + +G RLDGR  ++ R L+I FG EYG   VS G T++++ +T E
Sbjct: 6   ETSLNN--KEFVLNSLEKGLRLDGRQLSDFRSLEIQFGKEYGQVDVSFGHTRVMARITTE 63

Query: 306 VAQPKQIRPNEGIIFINVELNPMAAPQFEANRQTDLTVYLVRLLEKCYKDSKCIDLESLC 485
           + +P   RP +GI  I  EL P+A   FEA R +D  + + RL+EK  + S  +D ESLC
Sbjct: 64  ITKPYTDRPFDGIFSITTELTPLAYSAFEAGRVSDQEIVISRLIEKAVRRSNALDTESLC 123

Query: 486 IVVEEKVWSLRINIKVLNHDGNLTECASIATLASIAHF 599
           I+  +K W +R ++  +NHDGNL + A IA +A++ HF
Sbjct: 124 IISGQKCWHVRASVHFINHDGNLVDAACIAVIAALCHF 161



 Score = 53.2 bits (122), Expect = 5e-08
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
 Frame = +1

Query: 604 RPDFTRDGDRVIIHTLTEKDPIPTVLYHYPVCTTFALYSN-DILLSDPNFLEESVCTSNT 780
           RP+ T  G+ V +H + E+ P+P  + H P+C TF+ ++N ++ + D    EE +C    
Sbjct: 163 RPELTVVGEEVTVHPVEERVPVPLSILHMPICVTFSFFNNGELAIVDATLEEEDLC---- 218

Query: 781 EEGINTAGGLLVLGMNXYREVCLLDLTGAAI 873
                   G + + +N  REVC +   G  I
Sbjct: 219 -------NGSMTITLNKNREVCQIYKAGGII 242


>SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 270

 Score = 83.8 bits (198), Expect = 3e-17
 Identities = 45/150 (30%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
 Frame = +3

Query: 150 KNFIQKIVSQGHRLDGRNFNETRKLDIS---FGSEYGCCIVSLGETKILSEVTCEVAQPK 320
           + ++  +++Q  R DGR+ +E R++ I+     +  G  I+  GE   +  +  E+A+P 
Sbjct: 23  EQYLSHLLNQDVRSDGRSVSEFREIVINDNCISTANGSAIIRAGENVFVCGIKAEIAEPF 82

Query: 321 QIRPNEGIIFINVELNPMAAPQFEANRQTDLTVYLVRLLEKCYKDSKCIDLESLCIVVEE 500
           +  PNEG I  N+EL+P+ + +F+    +DL   + + L +  + S  I+L+SLCI  ++
Sbjct: 83  ENSPNEGWIVPNLELSPLCSSKFKPGPPSDLAQVVSQELHQTLQQSNLINLQSLCIFEKK 142

Query: 501 KVWSLRINIKVLNHDGNLTECASIATLASI 590
             W L  +I  LN+DG+  + A  A  A++
Sbjct: 143 AAWVLYADIICLNYDGSAFDYAWAALFAAL 172


>SPCC1494.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 274

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = +1

Query: 652 TEKDPI--PTVLYHYPVCTTFALY-SNDILLSDPNFLEESVCTSNTEEGINTAGGLLVLG 822
           TE +P+    V + Y  C +  +   ND LL D   + + +C S+T+ G+    G+L + 
Sbjct: 50  TEAEPVLEHRVTWEYETCVSVRMIIDNDNLLKDKFLILQVLCDSHTDSGVIRL-GILKIN 108

Query: 823 MNXY 834
           +  Y
Sbjct: 109 LTEY 112


>SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -1

Query: 331 GLICFG*ATSHVTSDRIFVSPKDTI 257
           GLI F  AT+H ++ + F+ PKDT+
Sbjct: 203 GLIAFRKATAHQSAMKEFLKPKDTL 227


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +3

Query: 423  LVRLLEKCYKDSKCIDLESLCIVVEEKVWSLRINIKVLN 539
            LVR+L K   D + + +++LC +V +  +   I I ++N
Sbjct: 1014 LVRMLGKSNGDLRAVIMDTLCAIVSQLGYDYSIFIPMVN 1052


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = -1

Query: 625 HLL*NQVSLKCAIEASVAILAHSVKLPSWFRTLILILKDQTFSSTTMQSDSRSMH 461
           H L +   + C      +IL HS+ LP   RT I +   Q   S    +   SMH
Sbjct: 468 HQLYDSDVMDCCFSFLASILTHSIALPRLLRTKIDLCTLQISLSNPTSTVLISMH 522


>SPBC14C8.02 |tim44||TIM23 translocase complex subunit
           Tim44|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 427

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +3

Query: 309 AQPKQIRPNEGIIFINVELNPMAAPQFEANRQTDLTVYLVRLLEKCYKDSK 461
           A   +I+PNE +  + V  NP    + E  +     V  ++ L+K Y++S+
Sbjct: 189 ASSARIQPNEDVQSVVVHSNPSWKNKVEQIKNESRLVRKIQELKKSYQESE 239


>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 578

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -3

Query: 869 AAPVKSSKHTSLX*FIPKTRRPPAVLMPSSVLLVHT 762
           AAPVK SK  S     P+TRR  +V   S+ +   T
Sbjct: 198 AAPVKKSKQKSASTAPPRTRRNSSVSSTSASVAAST 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,710,300
Number of Sequences: 5004
Number of extensions: 79342
Number of successful extensions: 196
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)