Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_D23
         (872 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    31   0.21 
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    27   3.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.5  
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual     27   3.5  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   8.1  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    26   8.1  
SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce...    26   8.1  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    26   8.1  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 36/127 (28%), Positives = 52/127 (40%), Gaps = 2/127 (1%)
 Frame = +2

Query: 179 FKAPNTYSMPPVLGEAKEGSKRAAPAFSITGRGKFSEAKGLMPGPGTYTTDRAAAALTKR 358
           F AP   +  P L  +   +++A    S+   G      G MP         A+AA    
Sbjct: 70  FAAPPVPTGAPSLPTSSNNTQQAEERPSMPALGGLFA--GGMPKLRHIGKSSASAAPPSA 127

Query: 359 PPAFTMAPRRELKPPTAAVPGPGVYCPEKVCVTLPWAPAHTFGIRHS--PFAGQAAHYXA 532
           P   T  P+ EL+PPT+A P P +  P     + P  P+    I  S  P A  AA   +
Sbjct: 128 PAPPT--PQSELRPPTSAPPRPSI--PPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKS 183

Query: 533 PEGIPAI 553
           P   P++
Sbjct: 184 PPSAPSL 190


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 309 PGINPLASENFPRPVILKAGAALLLPSFASPSTGGI 202
           P   P  +  FPR V+  AG  ++LP +  P   GI
Sbjct: 297 PQGEPPKTAQFPRMVVPSAGVHVVLPEYYCPPNIGI 332


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 34/123 (27%), Positives = 46/123 (37%), Gaps = 1/123 (0%)
 Frame = +2

Query: 185 APNTYSMPPVLGEAKEGSKRAAPAFSITGRGKFSEAKGLMPGPGTYTTDRAAAALTKRPP 364
           AP+T   PP L  ++  S   AP  +I GR     A  L   P      R +      PP
Sbjct: 369 APSTGRQPPPLSSSRAVSNPPAPPPAIPGR----SAPAL---PPLGNASRTSTPPVPTPP 421

Query: 365 AFTMAPRRELKPPTAAVPGP-GVYCPEKVCVTLPWAPAHTFGIRHSPFAGQAAHYXAPEG 541
           +   +    L PP+A    P G      +  + P AP    G+  +P    AA    P  
Sbjct: 422 SLPPSAPPSL-PPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAP 480

Query: 542 IPA 550
            PA
Sbjct: 481 APA 483


>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = -3

Query: 327 VVYVPGPGINPLASENFPRPVILKAGAALLLPSFASPST 211
           V+YVP P I PL  EN    +I     ++LLP + S +T
Sbjct: 335 VLYVPSPQIQPLWLENEDSNII--PTNSMLLPQWGSITT 371


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 465 GRRHIHLEFDTLRSPAKQLTTQHLKGSLLSN 557
           G  ++HL+++    P K LTT+  K S   N
Sbjct: 535 GLTYLHLDYNCNLKPTKTLTTKERKKSRFGN 565


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +2

Query: 278 KFSEAKGLMPGPGTYTTDRAAAALTKRPPAFTMAPRRELKPPTAAVPGP 424
           K+S    + P P   T     +A  +RPP+    PRR+   P  A+  P
Sbjct: 185 KYSAPSKIYPSPRRSTAATLESAYEERPPSL---PRRKPSRPGTAITLP 230


>SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 238

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +3

Query: 207 HRYLVKRKKGVKELHRLSVSQVV 275
           +++L   +KG +ELHR  +SQ++
Sbjct: 216 YQFLKDMRKGFRELHRKDLSQLI 238


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 223 FTKYRWHRISIGCFKNALFSVKTHSTERNH 134
           FTK  W+ IS G F N  FS++  S    H
Sbjct: 436 FTKGFWYAISFGVFSNC-FSLQLQSFFEKH 464


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,653,025
Number of Sequences: 5004
Number of extensions: 51773
Number of successful extensions: 132
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)