Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_D23
(872 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39644-7|AAO44908.1| 307|Caenorhabditis elegans Collagen protei... 31 1.1
Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical p... 30 2.5
AC024761-6|AAF59467.3| 599|Caenorhabditis elegans Hypothetical ... 30 2.5
AC024761-5|AAU05550.1| 601|Caenorhabditis elegans Hypothetical ... 30 2.5
Z97190-1|CAB10024.1| 1111|Caenorhabditis elegans Hypothetical pr... 29 4.3
AC024810-8|AAU20830.1| 1446|Caenorhabditis elegans Hypothetical ... 29 5.7
U41530-1|AAA83273.3| 636|Caenorhabditis elegans Hypothetical pr... 28 7.6
AC024847-11|AAO21416.1| 453|Caenorhabditis elegans Ground-like ... 28 7.6
AC024847-10|AAF60859.1| 393|Caenorhabditis elegans Ground-like ... 28 7.6
>U39644-7|AAO44908.1| 307|Caenorhabditis elegans Collagen protein
171 protein.
Length = 307
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Frame = -3
Query: 486 PNVCAGAQGKVTQTFSGQYTPGPGTAAVGGFSSRLG--AIVKAGGRFVNAAAALSVVYVP 313
PN G G+ + + GPG +GG + G + A G+ N + VP
Sbjct: 179 PNGNPGFDGQPGAPGNNGFAGGPGAPGLGGKDGQSGNAGVPGAPGKITNIQRPAGLPGVP 238
Query: 312 GPGINPLASENFP 274
GP I P+ S P
Sbjct: 239 GP-IGPVGSAGTP 250
>Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical
protein T20D3.11 protein.
Length = 1843
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +2
Query: 464 WAPAHTFGIRHSPFAGQAAHYXAPEGIPAI*HXPVCNTSYHCH*HN 601
W+P H FG++ +P + +P H P N+S H HN
Sbjct: 39 WSPKHWFGVKGNPDDILKLPLHFDDQLPTSSHHPPLNSSSHHSNHN 84
>AC024761-6|AAF59467.3| 599|Caenorhabditis elegans Hypothetical
protein Y38C1AA.5a protein.
Length = 599
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/63 (28%), Positives = 26/63 (41%)
Frame = +2
Query: 194 TYSMPPVLGEAKEGSKRAAPAFSITGRGKFSEAKGLMPGPGTYTTDRAAAALTKRPPAFT 373
T +M PV+ + P F I F + G+ PGT T + A+ P A+
Sbjct: 264 TSTMAPVMFTFPTTTTPLMPLFPIIPNVHFKQGVGVPFAPGTLPTTKVDASKWNDPSAYA 323
Query: 374 MAP 382
AP
Sbjct: 324 TAP 326
>AC024761-5|AAU05550.1| 601|Caenorhabditis elegans Hypothetical
protein Y38C1AA.5b protein.
Length = 601
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/63 (28%), Positives = 26/63 (41%)
Frame = +2
Query: 194 TYSMPPVLGEAKEGSKRAAPAFSITGRGKFSEAKGLMPGPGTYTTDRAAAALTKRPPAFT 373
T +M PV+ + P F I F + G+ PGT T + A+ P A+
Sbjct: 266 TSTMAPVMFTFPTTTTPLMPLFPIIPNVHFKQGVGVPFAPGTLPTTKVDASKWNDPSAYA 325
Query: 374 MAP 382
AP
Sbjct: 326 TAP 328
>Z97190-1|CAB10024.1| 1111|Caenorhabditis elegans Hypothetical protein
H05G16.1 protein.
Length = 1111
Score = 29.1 bits (62), Expect = 4.3
Identities = 23/86 (26%), Positives = 32/86 (37%), Gaps = 8/86 (9%)
Frame = +2
Query: 203 MPP----VLGEAKEGSKRAAPA----FSITGRGKFSEAKGLMPGPGTYTTDRAAAALTKR 358
MPP +L +A S R AP S+ K +E K G Y+ +T
Sbjct: 1022 MPPPPEEILNKAMISSSRPAPPPPPPKSLAAAVKVAEMKAAAAGKIYYSGSSRTGKITDS 1081
Query: 359 PPAFTMAPRRELKPPTAAVPGPGVYC 436
PP +P+ +VP P C
Sbjct: 1082 PPFIDDSPKNSSASDAPSVPSPQKNC 1107
>AC024810-8|AAU20830.1| 1446|Caenorhabditis elegans Hypothetical
protein Y54E10A.11 protein.
Length = 1446
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +3
Query: 492 DTLRSPAKQLTTQHLKGSLLSN 557
D+L PAK L HL G+LLSN
Sbjct: 482 DSLTLPAKHLELAHLHGNLLSN 503
>U41530-1|AAA83273.3| 636|Caenorhabditis elegans Hypothetical
protein SSSD1.1 protein.
Length = 636
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +2
Query: 314 GTYTTD-RAAAALTKRPPAFTMAPRRELK 397
G YT + + +A T +PP FT+AP E+K
Sbjct: 192 GWYTCEAKNSAGETTKPPVFTVAPPSEIK 220
>AC024847-11|AAO21416.1| 453|Caenorhabditis elegans Ground-like
(grd related) protein16, isoform b protein.
Length = 453
Score = 28.3 bits (60), Expect = 7.6
Identities = 28/79 (35%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Frame = -3
Query: 471 GAQGKVTQTFSGQYTPGPGTAAVGGFSSRLGAIVKAGGRFVNAAAAL---SVVYVPGP-G 304
G QG Q G Y GPG GG SS G+ +AG + A+ A+ S GP G
Sbjct: 97 GPQGFGGQVGGGAYQAGPGPIG-GGASSHAGS--QAGPSYAGASQAVGASSYARSQGPIG 153
Query: 303 INP-LASENFPRPVILKAG 250
P A + P PV + G
Sbjct: 154 GGPSYAGASQPAPVAPQGG 172
>AC024847-10|AAF60859.1| 393|Caenorhabditis elegans Ground-like
(grd related) protein16, isoform a protein.
Length = 393
Score = 28.3 bits (60), Expect = 7.6
Identities = 28/79 (35%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Frame = -3
Query: 471 GAQGKVTQTFSGQYTPGPGTAAVGGFSSRLGAIVKAGGRFVNAAAAL---SVVYVPGP-G 304
G QG Q G Y GPG GG SS G+ +AG + A+ A+ S GP G
Sbjct: 97 GPQGFGGQVGGGAYQAGPGPIG-GGASSHAGS--QAGPSYAGASQAVGASSYARSQGPIG 153
Query: 303 INP-LASENFPRPVILKAG 250
P A + P PV + G
Sbjct: 154 GGPSYAGASQPAPVAPQGG 172
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,052,411
Number of Sequences: 27780
Number of extensions: 318919
Number of successful extensions: 903
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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