Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_D20
         (906 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   2.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   2.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   5.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   5.1  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 625  PPPPPPP 645
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.2
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 625  PPPPPPP 645
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 22.2 bits (45), Expect = 6.7
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 657  PPPPPPXFXRXY 692
            PPPPPP   + Y
Sbjct: 1357 PPPPPPSSGQAY 1368


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +3

Query: 624 ASPPPPPXXXGP 659
           A PPPPP   GP
Sbjct: 342 APPPPPPSSSGP 353



 Score = 23.0 bits (47), Expect = 3.8
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 633 PPPPXXXGPPPPPP 674
           PP P    PPPPPP
Sbjct: 338 PPKP---APPPPPP 348



 Score = 22.6 bits (46), Expect = 5.1
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 533 PPXXXPPPPP 562
           PP   PPPPP
Sbjct: 338 PPKPAPPPPP 347


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = +3

Query: 585 PXXTPGGXKKXXXASPPPPPXXXGPPPPPP 674
           P  +P   ++    +P   P   GPP  PP
Sbjct: 27  PHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 13/38 (34%), Positives = 13/38 (34%)
 Frame = -1

Query: 744  GGVXXPPPXGGGXFXPXNXXXXKXGGGGXXXXLGGGGG 631
            GG     P       P        GGGG    LGG GG
Sbjct: 1681 GGGPDKIPETAEDISPYATFQLSEGGGGSLAGLGGLGG 1718


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 13/38 (34%), Positives = 13/38 (34%)
 Frame = -1

Query: 744  GGVXXPPPXGGGXFXPXNXXXXKXGGGGXXXXLGGGGG 631
            GG     P       P        GGGG    LGG GG
Sbjct: 1677 GGGPDKIPETAEDISPYATFQLSEGGGGSLAGLGGLGG 1714


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 266,109
Number of Sequences: 438
Number of extensions: 15839
Number of successful extensions: 34
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)