Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_D19
         (864 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    28   2.0  
SPMIT.09 |atp8||F0-ATPase subunit 8; similar to S. cerevisiae Q0...    27   3.4  
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|...    26   7.9  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    26   7.9  

>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +1

Query: 157 VTAAQNTSLIRNEKITDFFNKMLPELQGQNEWKEWFTFPYIQKPE--ENPSF 306
           V+  ++T     ++  +F    LP+++   EW +WF F  + + E  +NP F
Sbjct: 27  VSKKEDTEPEVRDEAKEFLLSQLPQVEVP-EWAQWFDFSKVHEIEKKQNPEF 77


>SPMIT.09 |atp8||F0-ATPase subunit 8; similar to S. cerevisiae
           Q0080|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 48

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = -3

Query: 229 LATFY*RNLLSFHFLLNWYSVQLSLSTVYI 140
           L  FY  N+LSF FL+  ++V L +S+VY+
Sbjct: 4   LVPFYFINILSFGFLI--FTVLLYISSVYV 31


>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 456

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 328 WQDSVLVSLHNLLATVFQCMPQPTLTSYESDAILV 432
           W+D + V  ++LL T+FQ  P P    + + AI +
Sbjct: 41  WKDRMSVKTNSLLQTLFQ-TPLPNANIWSNQAIRI 74


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = -2

Query: 320 VKYKLNEGFSSGFWM*GNVNHSFHSFCPCNSGNILLKKSVIFSFLIKLVFCAAVTKYS-- 147
           VK +  E F++GF + G ++HS +     N   +L   S +F  ++K    + V ++   
Sbjct: 517 VKIEYTEDFATGFAISGEISHSIN-----NLEFVLYSLSSLFLMMLKWFRLSHVLRFERL 571

Query: 146 LYKLYSN 126
            + LY N
Sbjct: 572 AFLLYEN 578


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,911,153
Number of Sequences: 5004
Number of extensions: 58922
Number of successful extensions: 181
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)