Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_D17
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces pom...    30   0.38 
SPAC19D5.02c |||peroxisomal membrane protein Pex22 |Schizosaccha...    27   3.6  
SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces...    26   6.2  
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po...    26   8.2  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    26   8.2  

>SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 18/69 (26%), Positives = 28/69 (40%)
 Frame = +1

Query: 157 NMSVEASDSGKSDRKLYNSVITADYDDATKRCEQLQSEPDGSYIIKNTVTELLNNAESNT 336
           +++V A DS  S           D+D   K  +  + EP G   + N    L  NA+ +T
Sbjct: 279 SVNVYAKDSNHSSASGNTKNKAKDWDSLAKLADLEEDEPTGEAALANLFQNLYKNADDDT 338

Query: 337 INFSYKLWT 363
                K +T
Sbjct: 339 RRAMMKSYT 347


>SPAC19D5.02c |||peroxisomal membrane protein Pex22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = -3

Query: 725 VAFVIHRLQVPLTCAV 678
           +AFV H L++P++CAV
Sbjct: 11  LAFVAHALEIPISCAV 26


>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 287

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -2

Query: 120 NLQFHLDSAYVLSSCIHDVHNTSDE 46
           +L+  L S+ +LS CI D+H+ S+E
Sbjct: 260 DLKNKLASSAILSRCIEDMHDKSNE 284


>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 742

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 22/100 (22%), Positives = 44/100 (44%), Gaps = 4/100 (4%)
 Frame = +1

Query: 109 KLKILTTLSVIIATFFNMSVEA----SDSGKSDRKLYNSVITADYDDATKRCEQLQSEPD 276
           ++ ++TT S++  T      +A    SDS   +  + +++    YD+     + +    D
Sbjct: 323 EVNMITTTSLVDNTMEKTDADAASLSSDSDGEEGHIVHALEEMAYDEENPYVDVVPKAMD 382

Query: 277 GSYIIKNTVTELLNNAESNTINFSYKLWTTGHQNIVQSCF 396
            S      V   +N A+ +T+N +Y + +T   N V   F
Sbjct: 383 ESENPDFGVDTEVNMADGSTMNENYSIISTAAANGVYEYF 422


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 633 QDHPFSNVDCISGXDFEINSVRFPRG 556
           +D   ++ DCIS  D  +++ R PRG
Sbjct: 362 RDAGLNSEDCISDDDMPVSNARKPRG 387


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,913,686
Number of Sequences: 5004
Number of extensions: 54642
Number of successful extensions: 174
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)