Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_D15
         (1000 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.15 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   0.78 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.4  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   1.8  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   3.1  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   7.2  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   7.2  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    26   9.5  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.9 bits (69), Expect = 0.15
 Identities = 16/49 (32%), Positives = 16/49 (32%)
 Frame = +1

Query: 811 PXTPPGXXPQXPPXXFPPXASPPYXXXKXXPTPPPPXAXXGXQXXPPGP 957
           P  PP       P   P    PP       P PPPP    G    PP P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 31.5 bits (68), Expect = 0.19
 Identities = 18/60 (30%), Positives = 18/60 (30%), Gaps = 1/60 (1%)
 Frame = +1

Query: 802 KXXPXTPPGXX-PQXPPXXFPPXASPPYXXXKXXPTPPPPXAXXGXQXXPPGPXXAXGXG 978
           K  P  PP    P   P   P     P       P PPP  A  G    PP P      G
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 28.7 bits (61), Expect = 1.4
 Identities = 16/46 (34%), Positives = 16/46 (34%)
 Frame = +1

Query: 847 PXXFPPXASPPYXXXKXXPTPPPPXAXXGXQXXPPGPXXAXGXGXP 984
           P   PP    P       P PPP     G    PP P  A G G P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVA-GAGPP 776



 Score = 27.5 bits (58), Expect = 3.1
 Identities = 17/56 (30%), Positives = 19/56 (33%), Gaps = 7/56 (12%)
 Frame = +1

Query: 811 PXTPPGXXPQXPPXXF----PPXASPPYXXXKXXPTPPPP---XAXXGXQXXPPGP 957
           P   P   P  PP       PP   PP       P PPPP    +  G +   P P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.5 bits (63), Expect = 0.78
 Identities = 18/55 (32%), Positives = 18/55 (32%), Gaps = 3/55 (5%)
 Frame = +1

Query: 811  PXTPPGXXPQXPPXXFPPXASPPYXXXKXXPTPPPPXA---XXGXQXXPPGPXXA 966
            P  P    P  P    PP  S P         PPPP A     G    PP P  A
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPA 1737



 Score = 27.5 bits (58), Expect = 3.1
 Identities = 12/38 (31%), Positives = 14/38 (36%)
 Frame = +2

Query: 836  PKXPPGXSPRXXAPPTXXXXXPXRPPPPXPXXAPKXXP 949
            P  PP   P   + P      P  PPPP P  +    P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 20/56 (35%), Positives = 20/56 (35%), Gaps = 6/56 (10%)
 Frame = +1

Query: 817 TPPGXXPQXPPXXFPPXASP--PYXXXKXXPTPP----PPXAXXGXQXXPPGPXXA 966
           TPP   P  PP   PP A P  P       P PP     P    G    PP P  A
Sbjct: 419 TPPSLPPSAPPS-LPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAA 473



 Score = 28.3 bits (60), Expect = 1.8
 Identities = 24/94 (25%), Positives = 26/94 (27%), Gaps = 5/94 (5%)
 Frame = +2

Query: 692 PPRXTXAPPXPRGRXPPXXXXXXXXXXXXXXXGAKXKKXXRXXPRGXXPKXPPGXSPRXX 871
           PP+   APP P  R  P                           R      P G + R  
Sbjct: 354 PPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTS 413

Query: 872 APP--TXXXXXPXRPP---PPXPXXAPKXXPRAP 958
            PP  T     P  PP   P  P   P   P AP
Sbjct: 414 TPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAP 447



 Score = 25.8 bits (54), Expect = 9.5
 Identities = 13/41 (31%), Positives = 13/41 (31%)
 Frame = +2

Query: 836 PKXPPGXSPRXXAPPTXXXXXPXRPPPPXPXXAPKXXPRAP 958
           P  PP        P       P  P  P P  AP   P AP
Sbjct: 447 PPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 15/33 (45%), Positives = 15/33 (45%)
 Frame = +1

Query: 820 PPGXXPQXPPXXFPPXASPPYXXXKXXPTPPPP 918
           PPG  P  PP   PP   PP       P PPPP
Sbjct: 5   PPGNPPPPPP---PPGFEPP-----SQPPPPPP 29



 Score = 27.1 bits (57), Expect = 4.1
 Identities = 13/38 (34%), Positives = 15/38 (39%)
 Frame = +2

Query: 845 PPGXSPRXXAPPTXXXXXPXRPPPPXPXXAPKXXPRAP 958
           PPG +P    PP         PPPP P    K   + P
Sbjct: 5   PPG-NPPPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
 Frame = +2

Query: 836 PKXPPGXSPRXXA-PPTXXXXXPXRP--PPPXPXXAPKXXPRAPFXQXGXAXPTQ 991
           P  P   +P+    PPT     P RP  PPP P  AP    +AP        P Q
Sbjct: 125 PSAPAPPTPQSELRPPTSA---PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQ 176



 Score = 26.2 bits (55), Expect = 7.2
 Identities = 16/47 (34%), Positives = 16/47 (34%), Gaps = 3/47 (6%)
 Frame = +1

Query: 820 PPGXXPQXPPXXFPPXASPPYXXXKXXPTP---PPPXAXXGXQXXPP 951
           PP   P  P    P  AS P    K  P P   PPP         PP
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPP 185



 Score = 25.8 bits (54), Expect = 9.5
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = +2

Query: 653 PXXXXPPXXGPXXPPRXTXAPPXPRGRXPP 742
           P    PP      PP  + APP P    PP
Sbjct: 145 PRPSIPPPSPASAPPIPSKAPPIPSSLPPP 174


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +2

Query: 824 RGXXPKXPPGXSPRXXAPPTXXXXXPXRPPPPXPXXAPK 940
           R   P+ PP  +P+   P       P  PPPP P   P+
Sbjct: 217 RAVSPEIPPTYTPKQADP------LPAPPPPPPPTLPPQ 249


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 22/97 (22%), Positives = 22/97 (22%), Gaps = 1/97 (1%)
 Frame = +1

Query: 670  PXXGPXXPPPGXXXPXXP-PGAXXPNXXXXXXXXXXXXXXXGXX*KXXPXTPPGXXPQXP 846
            P   P  P P    P  P P    P                G      P    G  P  P
Sbjct: 1136 PSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIP--PVPKPAAGVPPVPP 1193

Query: 847  PXXFPPXASPPYXXXKXXPTPPPPXAXXGXQXXPPGP 957
            P   PP   P        P    P         PP P
Sbjct: 1194 PSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVP 1230


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 20/52 (38%), Positives = 21/52 (40%)
 Frame = -2

Query: 957 GARGXXLGAXXGXGGGGRXGXFXXXVGGAXXRGEXPGGXLGXXPRGXXRXXF 802
           G+RG   G   G  GGG  G F     G   RG   GG  G   RG  R  F
Sbjct: 149 GSRGGFGGNSRGGFGGGSRGGF-----GGGSRGGSRGGFRG-GSRGGFRGRF 194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,799,382
Number of Sequences: 5004
Number of extensions: 19505
Number of successful extensions: 195
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 517271174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)