Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_D12
(875 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po... 36 0.008
SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces ... 33 0.071
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 31 0.22
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 29 0.87
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 29 1.1
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c... 28 1.5
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 28 2.0
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 27 4.6
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 26 8.1
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa... 26 8.1
>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 35.9 bits (79), Expect = 0.008
Identities = 23/106 (21%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
Frame = +1
Query: 187 LEDYLEMIEHLPQELRDRFTEMREMDLSVQN---NMDTLEKRVRTLFGGCRRGEINT-DQ 354
L +YL+ ++++P E + F E+ +++V + + + ++++ G + +
Sbjct: 9 LSEYLQTLDNVPNETKHIFDEISVKEVAVHDIWKRIQAADSQIQSYIKS--HGSLTPHPK 66
Query: 355 ANTEFSDIKRGYAKTLEEADEKTTLANQMYDLVDRYLRRLDTELHK 492
+ +S I+ Y K + +EK LA++ + R+++RLD L K
Sbjct: 67 EDALYSTIREEYQKAINIQNEKVQLADRARLGLTRHIKRLDDRLAK 112
>SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 305
Score = 32.7 bits (71), Expect = 0.071
Identities = 23/108 (21%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
Frame = +1
Query: 187 LEDYLEMIEHLPQELRDRFTEMREMDLSVQNNMDTLEKRVRTLFGGCRRGEINTDQANTE 366
L D+ + I +P+ + +FT ++E+D V++ + + V G + E N + + E
Sbjct: 12 LNDFTDAIVSVPESVCGKFTSLKEIDAQVRD----IRQNVIQEIGVVLKNEKNDELSGEE 67
Query: 367 FSD-IKRGYAKTLEEADEKTTLANQMYDLVDRYLRRLDTELHKFKCEL 507
+ +++ + L +D K LA + + + RLD + E+
Sbjct: 68 RCERLQKTLKEILPYSDSKICLATDAMNNIKSCIDRLDAGFEYVELEI 115
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 31.1 bits (67), Expect = 0.22
Identities = 31/136 (22%), Positives = 55/136 (40%), Gaps = 2/136 (1%)
Frame = +1
Query: 151 NLKHKTLTKMLYLEDYLEMIEHLPQELRDRFTEMREMDLSVQNNMDTLEKRVRTLFGGCR 330
N + TL+K D L ++ L E+ + + NN + ++ ++ TL C
Sbjct: 929 NQVYDTLSKSNISYDKLSLLRDEAMNLCVN-KELFSKVVGILNNAEEIKNKIATL---CE 984
Query: 331 RGEINTDQANTEFSDIKRGYAKT--LEEADEKTTLANQMYDLVDRYLRRLDTELHKFKCE 504
R + ++K A L E T +MYD+V ++RR K
Sbjct: 985 RSQEKDFALRPSIDEVKEALASAEKLPILSESTVTLQKMYDVVLEWIRRGKRLFGKANAP 1044
Query: 505 LEADNKGITELLEKRS 552
LE + + + +EKR+
Sbjct: 1045 LEILGQHL-DYVEKRN 1059
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 29.1 bits (62), Expect = 0.87
Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 13/125 (10%)
Frame = +1
Query: 226 ELRDRFTEMREMDLSVQNNM--------DTLEKRVRTLFGGCRRGEINT-----DQANTE 366
E R E+ MD+S+QN D L K+V L G++N N
Sbjct: 428 ETLQRSNELLRMDISMQNEALLLRKQENDRLVKQVEELTVALNSGKMNAIVEAESSKNEL 487
Query: 367 FSDIKRGYAKTLEEADEKTTLANQMYDLVDRYLRRLDTELHKFKCELEADNKGITELLEK 546
+ + KT E++ E T L Q+ D+ + Y + +L + + + D + E +E+
Sbjct: 488 WDSMMVSRMKTQEQSIELTRLYKQLQDIEEDY----ENKLMRMEQQWREDVDQLQEYVEE 543
Query: 547 RSLEL 561
+ EL
Sbjct: 544 ITQEL 548
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 28.7 bits (61), Expect = 1.1
Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 8/121 (6%)
Frame = +1
Query: 211 EHLPQELRDRFTEMREM-----DLSVQNNMDTLEKRVRTLFGGCRRGEINTDQANTEFSD 375
E +EL D E+ + D + + LEK + L + G + Q +
Sbjct: 1494 ERTEKELADSKNELEHLQSEAVDADGKTEISNLEKEIHELRSD-KEGLVQQVQNLSAELA 1552
Query: 376 IKRGYAKT---LEEADEKTTLANQMYDLVDRYLRRLDTELHKFKCELEADNKGITELLEK 546
R ++ T LE ADE L +Q+ Y + +TE+ + EL A+ + E LE
Sbjct: 1553 ALREHSPTQGSLENADEIARLRSQLESTKQYYEKEKETEILAARSELVAEKEKTKEELEN 1612
Query: 547 R 549
+
Sbjct: 1613 Q 1613
>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 865
Score = 28.3 bits (60), Expect = 1.5
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -3
Query: 708 ESVRDILLEEXHVGITISPTISSLFWPYAIPIFLVMTAV*CASVISINI 562
E + I +E+ + IS LF + +FL++ A+ C +I INI
Sbjct: 76 EPLWSIKVEDCLYNMGADAVISLLFSRFCRDVFLILAAICCTILIPINI 124
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 27.9 bits (59), Expect = 2.0
Identities = 23/109 (21%), Positives = 48/109 (44%), Gaps = 5/109 (4%)
Frame = +1
Query: 145 LTNLKHKTLTKMLYLEDYLEMIEHLPQELRDRFTEMREMDLSVQNNMDTLEKRVRTLFGG 324
L LK++ T + LED EHL + ++ F ++R+ S ++ + ++
Sbjct: 635 LEALKNENQTLLKNLEDSTARYEHLQKSFKNVFNQLRKQQPSNHGRNSSVSRSSSSV--- 691
Query: 325 CRRGEINTDQANTEFSDIKRGYAKT-----LEEADEKTTLANQMYDLVD 456
E+N+ ++ I + Y + LE+ D + + N + L+D
Sbjct: 692 ----EVNSKHPGSDDMLIDKEYTRNILFQFLEQRDRRPEIVNLLSILLD 736
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 26.6 bits (56), Expect = 4.6
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = -2
Query: 289 CPCYFGQTNPFLSFQ*ICLAVLAVDVLS----FPNNLQDTA 179
CP Y G+ NPF F+ I L V V+S NL DT+
Sbjct: 345 CPLYPGEENPFKRFK-IMLTVYTGKVISVEVQLSENLYDTS 384
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +1
Query: 187 LEDYLEMIEHLPQELRDRFTEMREMDLSVQNNMDTLEKRVR 309
LE L I L +MRE S N+D L+K+++
Sbjct: 1441 LEAQLREITKQKNMLEQSLDDMRERQRSTNRNLDVLKKQIQ 1481
>SPAC22F8.07c |rtf1||replication termination factor
Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 25.8 bits (54), Expect = 8.1
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 8/53 (15%)
Frame = +1
Query: 412 DEKTTLANQMYDLVDR-------YLRRLDTELHKFKCELEADNKG-ITELLEK 546
DE TL N +Y+L+DR YLRR K KC+ +++ + +L+EK
Sbjct: 222 DEMKTLYNCLYELIDRDKKSIYNYLRRKYNPFKK-KCKWTIEDEAELKKLVEK 273
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,764,647
Number of Sequences: 5004
Number of extensions: 51593
Number of successful extensions: 144
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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