Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_D12
(875 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0306 + 2391831-2391858,2392831-2392902,2393511-2393698,239... 66 5e-11
03_05_1128 + 30590727-30590772,30590868-30590939,30591181-305913... 61 1e-09
03_05_0176 + 21546952-21547887,21548856-21548921,21549959-215508... 34 0.13
10_08_0043 - 14390398-14391531,14391850-14393691,14393800-143968... 31 1.6
05_04_0311 - 20120172-20122115 29 3.7
11_01_0223 + 1746203-1746228,1746344-1746463,1746942-1747062,174... 29 4.9
06_03_0256 - 18841627-18841993,18842087-18842415,18842512-188427... 29 6.5
03_05_0362 + 23455372-23455619,23456570-23456966,23457400-23457561 29 6.5
11_04_0315 + 16306053-16306753,16306779-16308479,16308894-16309257 28 8.5
08_02_0546 - 18474217-18475133,18475207-18475396,18475870-184763... 28 8.5
07_01_0358 - 2631214-2632992 28 8.5
>03_01_0306 +
2391831-2391858,2392831-2392902,2393511-2393698,
2394143-2394203,2394306-2394368,2394396-2394474,
2394557-2394689,2394727-2394934,2398088-2398143,
2398252-2400030,2400128-2400281,2400467-2401125
Length = 1159
Score = 65.7 bits (153), Expect = 5e-11
Identities = 42/123 (34%), Positives = 65/123 (52%), Gaps = 5/123 (4%)
Frame = +1
Query: 178 MLYLEDYLEMIEHLPQELRDRFTEMREMDLSVQN----NMDTLEKRVRTLFGGCRRGEIN 345
M +LED+ +E LP L+ ++ MRE+D S+Q N ++ + + G G I
Sbjct: 1 MGFLEDFQASVEALPAMLQRNYSLMRELDKSLQGVQTGNEQRCQQEIEDIKHGLESGSIT 60
Query: 346 TDQANTEFSDIKRGYAK-TLEEADEKTTLANQMYDLVDRYLRRLDTELHKFKCELEADNK 522
D A +FSD K + ADEK LA+Q YDLVD ++++LD + K + EL + +
Sbjct: 61 YDPAKLKFSDEAIEEQKHCVRIADEKVALASQTYDLVDAHIQQLDQFMRKLE-ELRQEKE 119
Query: 523 GIT 531
T
Sbjct: 120 AAT 122
>03_05_1128 +
30590727-30590772,30590868-30590939,30591181-30591371,
30592004-30592067,30592713-30592963,30593066-30593104,
30593193-30593213
Length = 227
Score = 60.9 bits (141), Expect = 1e-09
Identities = 36/120 (30%), Positives = 64/120 (53%), Gaps = 6/120 (5%)
Frame = +1
Query: 181 LYLEDYLEMIEHLPQELRDRFTEMREMDLSVQNNMDTLEKRVRTLFG----GCRRGEINT 348
+Y++DYLE L +L+ + MRE+D M +++++ L G G R ++
Sbjct: 8 VYVDDYLEYSSTLAGDLQRILSTMRELDERAHGIMGQTKEQIKYLLGVPSHGFDRSNMDD 67
Query: 349 DQANTEF--SDIKRGYAKTLEEADEKTTLANQMYDLVDRYLRRLDTELHKFKCELEADNK 522
D++ +E DI+ L EK LA Q YDL++ +++RLD +L +F +L+ + K
Sbjct: 68 DESASERMKKDIEASQDNALSLCTEKVLLARQAYDLIESHIKRLDEDLGQFAEDLKQEGK 127
>03_05_0176 + 21546952-21547887,21548856-21548921,21549959-21550877,
21551277-21551449,21551927-21552475
Length = 880
Score = 34.3 bits (75), Expect = 0.13
Identities = 29/140 (20%), Positives = 62/140 (44%), Gaps = 3/140 (2%)
Frame = +1
Query: 151 NLKHKTLTKMLYLEDYLEMIEHLPQELRDRFTEMREMDLSVQNNMDTLEKRVRTLFGGCR 330
NL K T + +EDY++ + QE+ ++ + LS+ ++ L R + G C
Sbjct: 663 NLTDK-YTPLSIMEDYIQNAKETAQEILSMESDSESLKLSMSKQVNALILSWRVV-GECN 720
Query: 331 RGEINTDQANTEFSDIKRGYAK---TLEEADEKTTLANQMYDLVDRYLRRLDTELHKFKC 501
++ D+ E + + YA +LEE T+ +Q + + + + H+ +
Sbjct: 721 IDSVHCDRIKAEITQLLHKYANKRHSLEELPSDTSSPHQKHHQMSQEKHHWQ-QKHREEQ 779
Query: 502 ELEADNKGITELLEKRSLEL 561
+ + N+ + E+R +L
Sbjct: 780 QQQFQNQSKEQEQERRMQKL 799
>10_08_0043 -
14390398-14391531,14391850-14393691,14393800-14396825,
14397510-14397609
Length = 2033
Score = 30.7 bits (66), Expect = 1.6
Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 20/138 (14%)
Frame = +1
Query: 211 EHLPQELRDRFTEMREMDLSVQNNMDTLEKRV--------RTLFGGCRRGEINTD----- 351
E L QELRD +++ +QN + +L + TLF + E +D
Sbjct: 407 ELLIQELRDEINSLKDSKNELQNEIQSLRSTISQLNTEKDATLFQHQQSVERVSDLESQL 466
Query: 352 -QANTEFSDIKRGYAKTLEEADEKTTLANQMY-DLVDRYLRRLDTE--LHKFK---CELE 510
+ E +I++ +++ ++K A+ + L D R TE LH+FK +LE
Sbjct: 467 LKLQPELEEIEQKVQMLMQDLEQKRQEADSAHAQLQDECNRHTQTEADLHRFKNLHSQLE 526
Query: 511 ADNKGITELLEKRSLELD 564
+ +TE L++ + EL+
Sbjct: 527 EEVIKLTENLDRSTKELE 544
>05_04_0311 - 20120172-20122115
Length = 647
Score = 29.5 bits (63), Expect = 3.7
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = +1
Query: 118 VQS*YFNSYLTNLKHKTLTKMLYLEDYLEMIEHLPQELRDRFTEMREMDLSVQNNMDTLE 297
V + YF + K + L +L L + HLP + F +R +DLS ++++ L
Sbjct: 531 VSTDYFPQLKSKCKLERLRTLLVLRSSSLSLSHLPSKFLSEFKNLRVLDLS-ESDILELP 589
Query: 298 KRVRTLF 318
+ + LF
Sbjct: 590 ETISQLF 596
>11_01_0223 +
1746203-1746228,1746344-1746463,1746942-1747062,
1747441-1747572,1748266-1748375,1748465-1748648,
1749153-1749305,1749672-1749818
Length = 330
Score = 29.1 bits (62), Expect = 4.9
Identities = 12/46 (26%), Positives = 27/46 (58%)
Frame = +1
Query: 187 LEDYLEMIEHLPQELRDRFTEMREMDLSVQNNMDTLEKRVRTLFGG 324
L+D+L+ +EH + L + +++++D ++T E+ +R GG
Sbjct: 223 LKDFLQRMEHQMERLISQLNKVKDLDFPEFLALETWERNMREPAGG 268
>06_03_0256 -
18841627-18841993,18842087-18842415,18842512-18842749,
18844091-18844373,18844773-18844989,18845067-18845360
Length = 575
Score = 28.7 bits (61), Expect = 6.5
Identities = 33/109 (30%), Positives = 43/109 (39%), Gaps = 8/109 (7%)
Frame = +1
Query: 241 FTEMREMDLSVQNNMDTLEKRVRTLFGGCRRG--------EINTDQANTEFSDIKRGYAK 396
+ E++ + +S QN+M EK + G I DQ N E DIKR
Sbjct: 407 YKEVKSIYVSGQNDMQLREKAEAAYQADYKEGPFSFLHCWNILRDQPNPE--DIKRPIGT 464
Query: 397 TLEEADEKTTLANQMYDLVDRYLRRLDTELHKFKCELEADNKGITELLE 543
+A + V YL D E+ K K E NKG ELLE
Sbjct: 465 KTAKAQRNGKGRRKRKAKV--YLSDTDDEIDKLKEVQEMANKGRDELLE 511
>03_05_0362 + 23455372-23455619,23456570-23456966,23457400-23457561
Length = 268
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/60 (23%), Positives = 34/60 (56%)
Frame = +1
Query: 172 TKMLYLEDYLEMIEHLPQELRDRFTEMREMDLSVQNNMDTLEKRVRTLFGGCRRGEINTD 351
T++L +E+ +E+ ++R+ ++ ++ + N KR+++L C RG++NT+
Sbjct: 211 TRVLKMEEEMEVTS---SDVRNTGSDEKQQRSAAGNKKAEKRKRLKSLVKSCVRGKLNTN 267
>11_04_0315 + 16306053-16306753,16306779-16308479,16308894-16309257
Length = 921
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +1
Query: 139 SYLTNLKHKTLTKMLYLEDYLEMIEHLPQELRDRFTEMREMDLS 270
S+ N KH+ + +LYL+ L I + P + T++ E+ L+
Sbjct: 461 SHPENEKHRMMNNLLYLDLTLLSINNFPNDFFQGMTKLEELMLA 504
>08_02_0546 -
18474217-18475133,18475207-18475396,18475870-18476313,
18476629-18477495,18478858-18479367
Length = 975
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 271 VQNNMDTLEKRVRTLFGGCRRGEINTDQANTEF 369
VQ +++LEK+++T F + +TD+ N F
Sbjct: 732 VQTELESLEKKIKTYFRNVESIDRSTDELNIHF 764
>07_01_0358 - 2631214-2632992
Length = 592
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -3
Query: 453 NQIIHLVGKCGLFVSLF*SFGIAPLNIRKL 364
N ++HL G CGLF S F P+ R L
Sbjct: 155 NSLVHLYGACGLFESAHKVFDEMPVRGRNL 184
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,041,401
Number of Sequences: 37544
Number of extensions: 296806
Number of successful extensions: 691
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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