Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_D10
         (968 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.01 |qcr9||ubiquinol-cytochrome-c reductase complex subu...    38   0.003
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    30   0.56 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   6.9  
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    26   9.2  

>SPCC1682.01 |qcr9||ubiquinol-cytochrome-c reductase complex subunit
           10|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 85

 Score = 37.5 bits (83), Expect = 0.003
 Identities = 15/55 (27%), Positives = 30/55 (54%)
 Frame = +1

Query: 124 STLNRTVFKRTSTFALAVAGGTFFFERTFELVSQSIFENLNKGKLWKDIKHKYEN 288
           ST+    F+R S+F   +    FF +  F++ + S+++  N G  W ++K ++ N
Sbjct: 22  STIYNIFFRRNSSFYATIFVSAFFAKIGFDVFTDSVWKRANAGLTWDEVKPRFLN 76


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.9 bits (64), Expect = 0.56
 Identities = 26/83 (31%), Positives = 26/83 (31%), Gaps = 5/83 (6%)
 Frame = +1

Query: 664 GXGXEGFXXAXKXXPPXPXGGXGGFGXXGXPXPXSPXXXXXXXPPGXFXXXGXXXXXXPP 843
           G G  GF       PP P GG GGFG  G               PG F   G       P
Sbjct: 187 GGGFGGFGGGSGGPPPGP-GGFGGFGGFGGEGHHHGGHGGFGGGPGGF-EGGPGGFGGGP 244

Query: 844 XG-----GXXRVSPXXXGGXPPG 897
            G     G     P   GG P G
Sbjct: 245 GGFGGGLGGFGGGPGGFGGGPGG 267


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 15/39 (38%), Positives = 15/39 (38%)
 Frame = -1

Query: 749 PXXPKPPXPPXGXGGXXFXAXKNPSXPXPPXXXXKXKXK 633
           P  P PP PP G     F     P  P PP    K K K
Sbjct: 6   PGNPPPPPPPPG-----FEPPSQPPPPPPPGYVKKRKNK 39


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = -1

Query: 770 GEXGXGXPXXPKPPXPPXGXGGXXFXAXKNPSXPXP 663
           G  G G P  P PP P    GG  + A    + P P
Sbjct: 769 GVAGAGPPPPP-PPPPAVSAGGSRYYAPAPQAEPEP 803


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -1

Query: 212 SNVLSKKNVPPATAKANVDVRLKTVRFNVDHTDILKIFSR 93
           SN  S+K VPP+  +        T R   D+TD    FSR
Sbjct: 455 SNTTSRKGVPPSKRRRVRGGNNATSRTTSDNTDANDSFSR 494


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,226,239
Number of Sequences: 5004
Number of extensions: 32604
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 497299314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)