Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_D10
(968 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 34 0.17
Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical pr... 33 0.40
Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical pr... 33 0.40
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 33 0.40
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 33 0.40
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 33 0.40
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 32 0.71
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 32 0.71
Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 31 1.6
Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical pr... 30 2.2
AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical... 30 2.2
AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisome... 30 2.2
AL034543-4|CAA22518.1| 323|Caenorhabditis elegans Hypothetical ... 30 2.8
Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical pr... 29 3.8
AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical ... 29 5.0
Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical pr... 28 8.7
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 28 8.7
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 28 8.7
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 28 8.7
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 28 8.7
AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen prot... 28 8.7
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 33.9 bits (74), Expect = 0.17
Identities = 21/77 (27%), Positives = 22/77 (28%)
Frame = -1
Query: 890 GXPPXFXGETRXXPPXGGXXKXXXPXXXXXPGGXXXXXXXGEXGXGXPXXPKPPXPPXGX 711
G PP G P G + P PG G G P PP PP
Sbjct: 208 GSPPP-PGPPGPPGPPGNDGQPGAPGQDGQPGAPGTNTVNSPGGPGPAGPPGPPGPPGQD 266
Query: 710 GGXXFXAXKNPSXPXPP 660
G P P PP
Sbjct: 267 GSGGAAQPGPPGPPGPP 283
Score = 32.7 bits (71), Expect = 0.40
Identities = 24/87 (27%), Positives = 25/87 (28%), Gaps = 8/87 (9%)
Frame = -1
Query: 896 PGGXP--PXFXGETRXXPPXGGXXKXXXPXXXXXPGGXXXXXXXGEXG------XGXPXX 741
P G P P G+ PP G P PG G G G P
Sbjct: 194 PAGAPGVPGPDGDAGSPPPPGPPGPPGPPGNDGQPGAPGQDGQPGAPGTNTVNSPGGPGP 253
Query: 740 PKPPXPPXGXGGXXFXAXKNPSXPXPP 660
PP PP G P P PP
Sbjct: 254 AGPPGPPGPPGQDGSGGAAQPGPPGPP 280
Score = 28.3 bits (60), Expect = 8.7
Identities = 21/75 (28%), Positives = 23/75 (30%)
Frame = +1
Query: 661 GGXGXEGFXXAXKXXPPXPXGGXGGFGXXGXPXPXSPXXXXXXXPPGXFXXXGXXXXXXP 840
G G +G A + PP P G G G G P P PG P
Sbjct: 261 GPPGQDGSGGAAQPGPPGPPGPPGNDGQPG--GPGQPGGPGQDGGPGTDAAYCPCPPRTP 318
Query: 841 PXGGXXRVSPXXXGG 885
GG P GG
Sbjct: 319 AGGGGGGDFPAGGGG 333
>Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.3 protein.
Length = 283
Score = 32.7 bits (71), Expect = 0.40
Identities = 22/76 (28%), Positives = 24/76 (31%), Gaps = 2/76 (2%)
Frame = -1
Query: 881 PXFXGETRXXPPX--GGXXKXXXPXXXXXPGGXXXXXXXGEXGXGXPXXPKPPXPPXGXG 708
P F + PP GG P PG G G P P P G G
Sbjct: 133 PEFCFDCPAGPPGAVGGPGPKGPPGPPGGPGELGGPGRGGNRGPPGPRGPPGEAGPDGEG 192
Query: 707 GXXFXAXKNPSXPXPP 660
G A + S P PP
Sbjct: 193 GRPGQAGQTRSAPSPP 208
>Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.2 protein.
Length = 283
Score = 32.7 bits (71), Expect = 0.40
Identities = 22/76 (28%), Positives = 24/76 (31%), Gaps = 2/76 (2%)
Frame = -1
Query: 881 PXFXGETRXXPPX--GGXXKXXXPXXXXXPGGXXXXXXXGEXGXGXPXXPKPPXPPXGXG 708
P F + PP GG P PG G G P P P G G
Sbjct: 133 PEFCFDCPAGPPGAVGGPGPKGPPGPPGGPGELGGPGRGGNRGPPGPRGPPGEAGPDGEG 192
Query: 707 GXXFXAXKNPSXPXPP 660
G A + S P PP
Sbjct: 193 GRPGQAGQTRSAPSPP 208
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 32.7 bits (71), Expect = 0.40
Identities = 23/79 (29%), Positives = 23/79 (29%)
Frame = -1
Query: 896 PGGXPPXFXGETRXXPPXGGXXKXXXPXXXXXPGGXXXXXXXGEXGXGXPXXPKPPXPPX 717
P G PP G PP G P PGG P PP PP
Sbjct: 716 PPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPP 775
Query: 716 GXGGXXFXAXKNPSXPXPP 660
GG P P PP
Sbjct: 776 PPGGF----KGGPPPPPPP 790
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 32.7 bits (71), Expect = 0.40
Identities = 23/79 (29%), Positives = 23/79 (29%)
Frame = -1
Query: 896 PGGXPPXFXGETRXXPPXGGXXKXXXPXXXXXPGGXXXXXXXGEXGXGXPXXPKPPXPPX 717
P G PP G PP G P PGG P PP PP
Sbjct: 716 PPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPP 775
Query: 716 GXGGXXFXAXKNPSXPXPP 660
GG P P PP
Sbjct: 776 PPGGF----KGGPPPPPPP 790
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 32.7 bits (71), Expect = 0.40
Identities = 23/79 (29%), Positives = 23/79 (29%)
Frame = -1
Query: 896 PGGXPPXFXGETRXXPPXGGXXKXXXPXXXXXPGGXXXXXXXGEXGXGXPXXPKPPXPPX 717
P G PP G PP G P PGG P PP PP
Sbjct: 299 PPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPP 358
Query: 716 GXGGXXFXAXKNPSXPXPP 660
GG P P PP
Sbjct: 359 PPGGF----KGGPPPPPPP 373
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 31.9 bits (69), Expect = 0.71
Identities = 24/81 (29%), Positives = 25/81 (30%), Gaps = 1/81 (1%)
Frame = +1
Query: 706 PPXPXGGXGGFGXXGXPXPXSP-XXXXXXXPPGXFXXXGXXXXXXPPXGGXXRVSPXXXG 882
PP P G G G P P +P P G F G PP G S
Sbjct: 181 PPGPFGPSGAPPSGGPPGPFNPSEAPPSGGPTGPFDPSGAPPSGGPP--GPFNPSGAPPS 238
Query: 883 GXPPGKKXFXXKXPXKXAPKP 945
G PPG P P P
Sbjct: 239 GGPPGPFDPSGAPPSGGPPGP 259
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 31.9 bits (69), Expect = 0.71
Identities = 22/67 (32%), Positives = 22/67 (32%), Gaps = 3/67 (4%)
Frame = +1
Query: 706 PPXPXG---GXGGFGXXGXPXPXSPXXXXXXXPPGXFXXXGXXXXXXPPXGGXXRVSPXX 876
PP G G GG G G P P P PP G PP GG P
Sbjct: 393 PPSAFGAPQGPGGPGGYGPPPPGGPGAPGSYGPP----QGGPGGFGPPPPGGPGAYGPPP 448
Query: 877 XGGXPPG 897
G P G
Sbjct: 449 TGFPPVG 455
>Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical
protein F02D10.1 protein.
Length = 316
Score = 30.7 bits (66), Expect = 1.6
Identities = 23/83 (27%), Positives = 23/83 (27%), Gaps = 4/83 (4%)
Frame = -1
Query: 896 PGGXP--PXFXGETRXXPPXGGXXKXXXPXXXXXPGGXXXXXXXGEXGXGXPXXPKPPXP 723
P G P P G P G P PG GE G G P P P
Sbjct: 187 PAGSPAGPSGPGPAGPPGPAGPPGNDGQPGQPGGPGQDGASSAGGEAGPGPAGPPGPAGP 246
Query: 722 --PXGXGGXXFXAXKNPSXPXPP 660
P G G P P P
Sbjct: 247 AGPDGQSGSGSAGGPGPKGPPGP 269
>Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical
protein H06A10.2 protein.
Length = 305
Score = 30.3 bits (65), Expect = 2.2
Identities = 17/64 (26%), Positives = 18/64 (28%)
Frame = +1
Query: 706 PPXPXGGXGGFGXXGXPXPXSPXXXXXXXPPGXFXXXGXXXXXXPPXGGXXRVSPXXXGG 885
PP P G G G G P P P P G PP +
Sbjct: 192 PPGPAGPAGNDGAAGTPGPDGPAGESTYPEPAGPGPAGPPGPAGPPGPDGASPTAAPGAA 251
Query: 886 XPPG 897
PPG
Sbjct: 252 GPPG 255
>AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical
protein Y56A3A.27 protein.
Length = 759
Score = 30.3 bits (65), Expect = 2.2
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +1
Query: 706 PPXPXGGXGGFGXXGXPXPXSPXXXXXXXPP 798
PP GG GG G G P P P PP
Sbjct: 627 PPRGPGGGGGGGPTGPPAPPKPPAKPRGRPP 657
>AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA
topoisomerase III protein.
Length = 759
Score = 30.3 bits (65), Expect = 2.2
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +1
Query: 706 PPXPXGGXGGFGXXGXPXPXSPXXXXXXXPP 798
PP GG GG G G P P P PP
Sbjct: 627 PPRGPGGGGGGGPTGPPAPPKPPAKPRGRPP 657
>AL034543-4|CAA22518.1| 323|Caenorhabditis elegans Hypothetical
protein Y81G3A.5 protein.
Length = 323
Score = 29.9 bits (64), Expect = 2.8
Identities = 21/77 (27%), Positives = 22/77 (28%)
Frame = +1
Query: 661 GGXGXEGFXXAXKXXPPXPXGGXGGFGXXGXPXPXSPXXXXXXXPPGXFXXXGXXXXXXP 840
G G G A PP P G G G G P PPG G
Sbjct: 196 GDEGIPGVPGANVICPPGPAGSMGSVGLPGPPGNDLGNSNGPPGPPGQMGQPGKPG---- 251
Query: 841 PXGGXXRVSPXXXGGXP 891
GG + P G P
Sbjct: 252 SMGGLGQSGPTGSDGIP 268
>Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical
protein C53B4.5 protein.
Length = 289
Score = 29.5 bits (63), Expect = 3.8
Identities = 18/66 (27%), Positives = 19/66 (28%), Gaps = 1/66 (1%)
Frame = +1
Query: 706 PPXPXGGXGGFGXXGXPXPXSP-XXXXXXXPPGXFXXXGXXXXXXPPXGGXXRVSPXXXG 882
PP P G G G G P P P P G G PP P
Sbjct: 148 PPGPQGNKGPLGPPGPPGPEGPNGTAGNKGPAGPPGPGGKPGPAGPPGENGRNGEPQPGS 207
Query: 883 GXPPGK 900
PG+
Sbjct: 208 PGEPGR 213
>AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical
protein C24F3.6 protein.
Length = 291
Score = 29.1 bits (62), Expect = 5.0
Identities = 18/66 (27%), Positives = 19/66 (28%), Gaps = 1/66 (1%)
Frame = +1
Query: 706 PPXPXGGXGGFGXXGXPXPXSP-XXXXXXXPPGXFXXXGXXXXXXPPXGGXXRVSPXXXG 882
PP P G G G G P P P P G G PP P
Sbjct: 150 PPGPDGNKGPLGPPGPPGPEGPNGEPGNKGPAGPPGPGGKPGPAGPPGENGNNGEPQPGA 209
Query: 883 GXPPGK 900
PG+
Sbjct: 210 PGEPGQ 215
>Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.5 protein.
Length = 316
Score = 28.3 bits (60), Expect = 8.7
Identities = 21/80 (26%), Positives = 24/80 (30%), Gaps = 3/80 (3%)
Frame = -1
Query: 890 GXPPXFXGETRXXPPXGGXXKXXXPXXXXXPGGXXXXXXXGEXGXGXP---XXPKPPXPP 720
G P G+ PP G P PG G+ G G P P P PP
Sbjct: 160 GAPAQGGGQGPPGPP-GPAGSAGSPGQAGAPGNPGSPGKSGQRGRGLPGPSGAPGPQGPP 218
Query: 719 XGXGGXXFXAXKNPSXPXPP 660
G P+ P P
Sbjct: 219 GAPGQPGSGNAPGPAGPPGP 238
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 28.3 bits (60), Expect = 8.7
Identities = 22/83 (26%), Positives = 25/83 (30%), Gaps = 4/83 (4%)
Frame = -1
Query: 896 PGGXPPXFXGETRXXP--PXGGXXKXXXPXXXXXPGGXXXXXXXGEXGXGXPXXPKPPXP 723
P G P G + P P G PGG + G G P PP P
Sbjct: 169 PDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPAGPPGP 228
Query: 722 --PXGXGGXXFXAXKNPSXPXPP 660
P G G P+ P P
Sbjct: 229 AGPAGNDGAPGTGGPGPAGPKGP 251
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 28.3 bits (60), Expect = 8.7
Identities = 22/83 (26%), Positives = 25/83 (30%), Gaps = 4/83 (4%)
Frame = -1
Query: 896 PGGXPPXFXGETRXXP--PXGGXXKXXXPXXXXXPGGXXXXXXXGEXGXGXPXXPKPPXP 723
P G P G + P P G PGG + G G P PP P
Sbjct: 169 PDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPAGPPGP 228
Query: 722 --PXGXGGXXFXAXKNPSXPXPP 660
P G G P+ P P
Sbjct: 229 AGPAGNDGAPGTGGPGPAGPKGP 251
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 28.3 bits (60), Expect = 8.7
Identities = 22/83 (26%), Positives = 25/83 (30%), Gaps = 4/83 (4%)
Frame = -1
Query: 896 PGGXPPXFXGETRXXP--PXGGXXKXXXPXXXXXPGGXXXXXXXGEXGXGXPXXPKPPXP 723
P G P G + P P G PGG + G G P PP P
Sbjct: 169 PDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPAGPPGP 228
Query: 722 --PXGXGGXXFXAXKNPSXPXPP 660
P G G P+ P P
Sbjct: 229 AGPAGNDGAPGTGGPGPAGPKGP 251
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 28.3 bits (60), Expect = 8.7
Identities = 22/83 (26%), Positives = 25/83 (30%), Gaps = 4/83 (4%)
Frame = -1
Query: 896 PGGXPPXFXGETRXXP--PXGGXXKXXXPXXXXXPGGXXXXXXXGEXGXGXPXXPKPPXP 723
P G P G + P P G PGG + G G P PP P
Sbjct: 169 PDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPAGPPGP 228
Query: 722 --PXGXGGXXFXAXKNPSXPXPP 660
P G G P+ P P
Sbjct: 229 AGPAGNDGAPGTGGPGPAGPKGP 251
>AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen protein
103 protein.
Length = 371
Score = 28.3 bits (60), Expect = 8.7
Identities = 18/70 (25%), Positives = 18/70 (25%)
Frame = -2
Query: 868 GKPXXPPXWGXXXXPXXPXPXXXXGAXGXXXXXGKXXKGXXXXQNXPXPPXGXGGXFLXX 689
G P P G P P G G G G P PP G
Sbjct: 218 GAPGAPGPAGDAGSPGQPGAPGQPGRPGKNAQGGSSRPGPPGPAGPPGPPGNNGAPGGGY 277
Query: 688 XKTPPXPXPP 659
PP P P
Sbjct: 278 GVGPPGPPGP 287
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,437,175
Number of Sequences: 27780
Number of extensions: 248507
Number of successful extensions: 1227
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1088
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2510937120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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