Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_D09
         (884 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024741-1|AAK68394.3|  789|Caenorhabditis elegans Hypothetical ...    29   5.8  

>AC024741-1|AAK68394.3|  789|Caenorhabditis elegans Hypothetical
           protein R05G9R.1 protein.
          Length = 789

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 22/74 (29%), Positives = 33/74 (44%)
 Frame = -3

Query: 738 APRXPEGRKAXQVSRKRQGRNRRAHEGASRGXRLVSL*SCRVSPPLT*ASIFVMLVQGGR 559
           AP     R   + S+ R G ++R      R  R   L S  + PP T  S F++L  GG 
Sbjct: 135 APLAVRPRALRKFSKNRYGISKRKFLKTVRTGRAEILHS-PIEPPTTSLSPFIVLHHGGT 193

Query: 558 SLWKNASNAAFLRF 517
           ++  ++   AF  F
Sbjct: 194 AIQTSSQPPAFSPF 207


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,242,773
Number of Sequences: 27780
Number of extensions: 341076
Number of successful extensions: 856
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)